Msep284513.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068376.1:305821875-305822495[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.5e-08 8.8e-06 29.4 0.0 5 42 18 55 16 57 0.94
Sequence Information
- Coding Sequence
- ATGCCCAGAAGTACAGGAGGGGTGAAAAGGCCTGCTGTTAACGTTCAAAGTTTGAAAGAAGCTATAGAAGATGTTCATGTCAGGAAGTTATCCATTGGAGTAGCAGCAAAAAATCACGGGATCTCTAAAACAACACTGCTGCGCCACTTGAAAGCACATACTTCCTCAGGAGATAAGGATTTTCAGTACAAGTCGAATATAAATGTGAAACAAATCTTTACTGAAGAAGAAGAGGTGAGTCTTGTAAATTATTTAAAGGTAGCTTCGAGGCTACATTATGGGCTAACTAAAAGAGACACAAGAATATTAGCCTATCAGTTTGCAAGAGAAAACAAACAATCTATAACTGAAAGGTGGAATAACGAAGGCGTTGCTGGTAAAGAGTGGTTGAGAGGGTTTTTACAGAGACACAAAACTTTGTCTTTAAGAAAGCCAGAAGCTACTAGCCTTGCTCGTTCAACTAGCTTCAATAAAAAAAATGTGGGAGACTTTTTTACTAATTTGAAGGCCTGTTTATCTCGTGATCAGTTTGGTgccaacaaaatttataatttagatGAGACAGGTAATTCAACTGTCCACGTTCCTCCCAAAATAATCGCACCTCGTGGTGCAAAATAA
- Protein Sequence
- MPRSTGGVKRPAVNVQSLKEAIEDVHVRKLSIGVAAKNHGISKTTLLRHLKAHTSSGDKDFQYKSNINVKQIFTEEEEVSLVNYLKVASRLHYGLTKRDTRILAYQFARENKQSITERWNNEGVAGKEWLRGFLQRHKTLSLRKPEATSLARSTSFNKKNVGDFFTNLKACLSRDQFGANKIYNLDETGNSTVHVPPKIIAPRGAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00944769; iTF_00944707; iTF_00944712; iTF_00944715; iTF_00945003; iTF_00944716; iTF_00944780; iTF_00944717; iTF_00944720; iTF_00944752; iTF_00945173; iTF_00945206; iTF_00944759; iTF_00944760; iTF_00944985; iTF_00945249; iTF_00944988; iTF_00944771;
- 90% Identity
- iTF_00944780;
- 80% Identity
- -