Msep002271.1
Basic Information
- Insect
- Magicicada septendecula
- Gene Symbol
- -
- Assembly
- GCA_034769895.1
- Location
- CM068367.1:46019251-46019751[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-08 6.1e-06 29.9 0.0 5 42 18 55 16 57 0.94
Sequence Information
- Coding Sequence
- ATGCCCAGAAGTACAGGAGGGGTGAAAAGGCCTGCTGTTGACGTTCAAAGTTTGAAAGAAGCTATAGAAGATGTTCATGTCAGGAAGTTATCCATTGGAGTAGCAGCAAAAAATCACGGGATCTCTAAAACAACACTGTTGCGCCACTTGAAAGCACATACTTCCTCAGGAGATAAGGATTTTCAGTACAAGTCGAATATAAATGTGAAACAAATCTTTACTGAAGAAGAAGAGGTGAGTCTTGTAAATTATTTAAAGGTAGCTTCGAGGCTACATTATGGCCTAACTAAAAGAGACACAAGAATATTAGCCTATCAGTTTGCAAGAGAAAACAAACAATCTATAACTGAAAAGTGGAATAACGAAGGCATTGCTGGTAAAGAGTGGTTGAGAGGGTTTTTACAGAGACACAAAACTTTGTCTTTAAGAAAGTCAGAAGCTACGAGCCTTGCTCGTTCAACtagcttcaataaaaaaaaatgtggGAGACTTTTTTACTAA
- Protein Sequence
- MPRSTGGVKRPAVDVQSLKEAIEDVHVRKLSIGVAAKNHGISKTTLLRHLKAHTSSGDKDFQYKSNINVKQIFTEEEEVSLVNYLKVASRLHYGLTKRDTRILAYQFARENKQSITEKWNNEGIAGKEWLRGFLQRHKTLSLRKSEATSLARSTSFNKKKCGRLFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00944774;
- 90% Identity
- iTF_00944780;
- 80% Identity
- iTF_00944716; iTF_00944717;