Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.4e-11 3.9e-09 40.1 0.0 1 39 74 113 74 117 0.90

2 4 5.3e-12 8.6e-10 42.2 0.1 1 39 128 166 128 169 0.95

3 4 2.8e-17 4.5e-15 59.1 0.0 2 45 184 228 183 228 0.97

4 4 1.8e-17 2.9e-15 59.7 0.1 1 43 235 278 235 279 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.4e-11	3.9e-09	40.1	0.0	1	39	74	113	74	117	0.90
2	4	5.3e-12	8.6e-10	42.2	0.1	1	39	128	166	128	169	0.95
3	4	2.8e-17	4.5e-15	59.1	0.0	2	45	184	228	183	228	0.97
4	4	1.8e-17	2.9e-15	59.7	0.1	1	43	235	278	235	279	0.96

Coding Sequence: ATGCTGAAATCCTGGTCGGGGAGGTTCAGCCCTCATCGGAACTTTTGGTCTCTGTCGCTAAGCTGGAATAACGTTAGCGAAGACGACACAGAACACACGATGCATACGATGATGATAACACCAGAACTTCTAGGACTTATACCATCATCGTCTGTACATTCAGAGATTAATGATGATGATACAGGGATAAAGCGAGAGTCGACGGGGAACAAGTCGTGGACACAAGAAGACATGGAGGCTGCTTTAGAGGCTTTGAGGAATCATTCGATGAGTTTGACCAAGGCATCAGTAACATTTGGAATTCCGTCGACAACGTTATGGCAACGGGCGCATAGACTCGGTATAGACACTCCAAAGAAAGATGGGCCTGCCAAGTCGTGGACAGAAGACAATCTGAACATAGCGTTAGAGGCTTTACGCAATGGTTCCATTTCTGCAAACAAGGCTAGCAAAGCATATGGTATACCGAGTAGTACTTTGTATAAGATAGCTCGGCGTGAGGGAATTCGTTTGGCTGCACCATTCAATGCTGCACCTACAACGTGGAACCCGGATGACTTAGAAAGAGCGTTGGAAGCGATACGATCGGGACAGACAACGGTACAGCGGGCTGCTTCAGAATACGGCATTCCATCTGGTACATTGTATGGACGTTGTAAGAGAGAAGGAATTGAACTGTCTAGGAGTAATCCGACGCCGTGGTCTGAAGATGCTATGACAGAAGCATTGGAAGCAGTCAGACTGGGACAAATGAGTATAAACCAAGCCGCTATTCACTACAACCTGCCGTACTCATCGTTGTATGGCCGATTCAAACGAGTCAAGTACGAGGCTGACCATCCCGATACGGAGGACATGAGCATACAACAGCAGCACCACAGCATTCCGCCGCAGATCATGTTGGTGCAGTACCAGCAGGCGCCGACACAGCTACAGATGTACCAGCACGCGCCCAGTTGA
Protein Sequence: MLKSWSGRFSPHRNFWSLSLSWNNVSEDDTEHTMHTMMITPELLGLIPSSSVHSEINDDDTGIKRESTGNKSWTQEDMEAALEALRNHSMSLTKASVTFGIPSTTLWQRAHRLGIDTPKKDGPAKSWTEDNLNIALEALRNGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWNPDDLERALEAIRSGQTTVQRAASEYGIPSGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGQMSINQAAIHYNLPYSSLYGRFKRVKYEADHPDTEDMSIQQQHHSIPPQIMLVQYQQAPTQLQMYQHAPS

Sequence clustering based on sequence similarity using MMseqs2