Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.5e-12 7.3e-10 40.7 0.0 1 39 52 91 52 95 0.90

2 4 1.6e-11 3.3e-09 38.6 0.1 1 39 106 144 106 147 0.94

3 4 2.6e-17 5.3e-15 57.2 0.0 2 45 162 206 161 206 0.97

4 4 7.6e-18 1.6e-15 58.9 0.0 1 43 213 256 213 257 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.5e-12	7.3e-10	40.7	0.0	1	39	52	91	52	95	0.90
2	4	1.6e-11	3.3e-09	38.6	0.1	1	39	106	144	106	147	0.94
3	4	2.6e-17	5.3e-15	57.2	0.0	2	45	162	206	161	206	0.97
4	4	7.6e-18	1.6e-15	58.9	0.0	1	43	213	256	213	257	0.96

Coding Sequence: ATGGGAGATGAGGAACCAGATCATGCAATGCATACGATGATGATAACACCTGAACTTTTAGGCCTAATACCTTCATCCTCTGTACATGcagATTTAAATGGTGATACTAACGGTATGAAAAGAGAAAACGCAGGACTTGGGTCAAAGACGTGGACACAAGAAGACATGGATGCTGCTCTTGAGGCTTTGAGGACGCATAGTATGAGTCTTACGAAAGCTTCTATAACATATGGTATACCGTCAACCACACTGTGGCAACGTGCTCATAGATTAGGCATAGATACACCTAAGAAAGATGGACCTGCTAAATCGTGGACAGAGGATGTACTTAATGTTGCTTTAGAAGCGTTAAGGAATGGAACCATATCTGCTAATAAAGCTAGCAAAGCTTATGGAATCCCAAGCAGTACATTGTATAAGATAGCAAGACGTGAAGGCATCAGATTAGCAGCACCATTCAATGCAGCTCCAACAACATGGAATCCAGAAGACTTAGAAAGAGCTTTGGAAGCAATAAGATCAGGGCAGACTACAGTTCAGAGAGCAGCAACTGAATTTGGTATCCCTTCAGGAACATTATATGGGAGATGTAAAAGAGAAGGCATTGAACTGTCTCGAAGTAACCCTACGCCATGGTCGGAAGATGCAATGACTGAAGCTTTAGAGGCAGTTAGAATGGGACAAATGAGTATAAACCAAGCAGCTATCCATTATAATTTACCGTACTCCTCGTTGTACGGTCGTTTCAAACGTTGTAAATACGAAGCTGATCACCCCGTAGAGAATGAAGAAGTAGGCTTAGCTCAACAGCATCACACAATTCCTCCTCAGATCATGCTTGTTCAGTATCAGCAAGCTCCTACGCAGTTACAGATGTACCAACACACGCCTAGTTGA
Protein Sequence: MGDEEPDHAMHTMMITPELLGLIPSSSVHADLNGDTNGMKRENAGLGSKTWTQEDMDAALEALRTHSMSLTKASITYGIPSTTLWQRAHRLGIDTPKKDGPAKSWTEDVLNVALEALRNGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWNPEDLERALEAIRSGQTTVQRAATEFGIPSGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRMGQMSINQAAIHYNLPYSSLYGRFKRCKYEADHPVENEEVGLAQQHHTIPPQIMLVQYQQAPTQLQMYQHTPS

Sequence clustering based on sequence similarity using MMseqs2