Meup054407.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010001228.1:548990-550249[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.2 3.1e+03 0.3 0.0 27 44 8 25 4 35 0.84 2 14 1.2 2.9e+03 0.4 0.1 20 39 29 48 15 57 0.72 3 14 0.52 1.3e+03 1.5 0.1 21 44 58 81 50 91 0.80 4 14 6 1.5e+04 -1.9 0.1 23 37 88 102 78 112 0.77 5 14 0.034 85 5.3 0.0 21 44 114 137 106 145 0.86 6 14 0.36 9.2e+02 2.0 0.3 15 43 136 164 134 173 0.69 7 14 0.42 1.1e+03 1.8 0.1 19 43 168 192 161 201 0.79 8 14 0.09 2.3e+02 3.9 0.0 21 43 198 220 190 225 0.86 9 14 0.013 34 6.6 0.0 15 43 220 248 218 253 0.86 10 14 0.025 64 5.7 0.1 16 43 249 276 247 281 0.85 11 14 0.025 65 5.7 0.1 15 44 276 305 274 313 0.83 12 14 0.26 6.5e+02 2.5 0.1 15 44 304 333 302 341 0.78 13 14 0.033 85 5.3 0.0 22 44 339 361 329 369 0.84 14 14 0.061 1.5e+02 4.5 0.1 20 43 365 388 359 393 0.87
Sequence Information
- Coding Sequence
- ATGGAGAAGAACTCTTACCCTTGCGATGTCTGTGACAAGTCATTCAGCCCAAGTAGCAATTTGACGAGACATAAACGTACCAATACTGGCGAAAAACCTTATGcctgcgatgtatgtgacaaaccCTTCAGCCAAAATGCCAGTTTAACGATACACAAACGaacacacactggcgaaaaaccgtacgcatgcgatgtatgtgacaagtcgttcgctgtaagttgtgatttaacgaaacatcaacGTACACACACAGGTGGCAAaccctacgcatgcgatgtatgtgacaaatccttcagccaaagtgCCTGTTCAACGATACACAAACGaacacacactggcgaaaaaccgtacgcatgcgatgtatgtgacaaatccttcagtcAAAGTACcagtttaacgaaacatcgacgcacgcatactggcgaaaaaccgtacgcatgcgatgtatgtgacaagtcgttcgctgtaaattgtaatttaacgaatcatcgacgcacacatactggagaaaaaccgtacgcatgcgatgtatgtgacaagtcgttcgctgtaagttgtgatttaacgaaacatcaacgtacacacactggtgacaaaccctacgcatgcgatgtatgtgacaaatccttcagccaaagtaccgatttaacgaaacatcgacgcacacatactggagaaaaaccctacgcatgcgatgtatgtgacaaatccttcagccaaagtaccgatttaacgaaacatcgacgcacacatactggagaaaaaccgtacgcatgcgatgtatgtgacaaatccttcagtcAAAGTACcagtttaacgaaacatcgacgcacacatactggagaaaaaccgtacgcatgcgatttatgtgacaaatccttcagccaaagtaccagtttaacgaaacatcgacgcacacatactggtgaaaaaccgtacgcatgcgatgtatgtgacaagtcgttcgctgtaagttgtgatttaacgaaacatcaacGTACACACACAGGTGGCAAaccctacgcatgcgatgtatgtgacaaatccttcagccaaagtactaatttaacgaatcatcgacgcacacatactggagaaaaaccgtacgcatgcgatttatgtgacaaatccttcagccaaagtaccaGTTTAACcaaacatcgacgcacacatactggtgAAAacccgtacgcatgcgatgcaTTCTCTGTAAGTGGCAATTTGGTGGCACACAAGTGGAAGCACAAGGAACACTGA
- Protein Sequence
- MEKNSYPCDVCDKSFSPSSNLTRHKRTNTGEKPYACDVCDKPFSQNASLTIHKRTHTGEKPYACDVCDKSFAVSCDLTKHQRTHTGGKPYACDVCDKSFSQSACSTIHKRTHTGEKPYACDVCDKSFSQSTSLTKHRRTHTGEKPYACDVCDKSFAVNCNLTNHRRTHTGEKPYACDVCDKSFAVSCDLTKHQRTHTGDKPYACDVCDKSFSQSTDLTKHRRTHTGEKPYACDVCDKSFSQSTDLTKHRRTHTGEKPYACDVCDKSFSQSTSLTKHRRTHTGEKPYACDLCDKSFSQSTSLTKHRRTHTGEKPYACDVCDKSFAVSCDLTKHQRTHTGGKPYACDVCDKSFSQSTNLTNHRRTHTGEKPYACDLCDKSFSQSTSLTKHRRTHTGENPYACDAFSVSGNLVAHKWKHKEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00942018;
- 90% Identity
- iTF_00942018;
- 80% Identity
- iTF_00942018;