Basic Information

Insect: Macrosiphum euphorbiae
Gene Symbol: -
Assembly: GCA_949089665.1
Location: CARXXK010000002.1:84307098-84308789[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.67 1.7e+03 1.1 0.1 21 31 58 68 50 84 0.79

2 17 0.053 1.4e+02 4.7 0.1 21 45 86 110 79 117 0.82

3 17 0.15 3.7e+02 3.3 0.0 21 44 114 137 109 146 0.84

4 17 0.61 1.6e+03 1.3 0.0 21 46 142 167 134 173 0.79

5 17 0.065 1.6e+02 4.4 0.1 20 45 169 194 163 201 0.81

6 17 0.14 3.7e+02 3.3 0.1 21 44 198 221 192 229 0.84

7 17 0.55 1.4e+03 1.4 0.2 20 30 225 235 218 252 0.77

8 17 0.048 1.2e+02 4.8 0.1 21 46 254 279 246 286 0.83

9 17 0.14 3.6e+02 3.3 0.0 21 44 282 305 276 313 0.84

10 17 0.61 1.5e+03 1.3 0.0 21 46 310 335 302 341 0.79

11 17 0.2 5.1e+02 2.8 0.1 20 43 337 360 331 365 0.81

12 17 0.16 4.1e+02 3.1 0.0 21 44 366 389 359 399 0.84

13 17 0.76 1.9e+03 1.0 0.0 22 45 395 418 389 425 0.81

14 17 0.13 3.3e+02 3.4 0.0 21 44 422 445 416 455 0.84

15 17 0.13 3.2e+02 3.4 0.0 21 44 478 501 472 511 0.84

16 17 0.56 1.4e+03 1.4 0.0 21 45 506 530 498 537 0.79

17 17 0.061 1.6e+02 4.5 0.1 21 44 534 557 528 563 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.67	1.7e+03	1.1	0.1	21	31	58	68	50	84	0.79
2	17	0.053	1.4e+02	4.7	0.1	21	45	86	110	79	117	0.82
3	17	0.15	3.7e+02	3.3	0.0	21	44	114	137	109	146	0.84
4	17	0.61	1.6e+03	1.3	0.0	21	46	142	167	134	173	0.79
5	17	0.065	1.6e+02	4.4	0.1	20	45	169	194	163	201	0.81
6	17	0.14	3.7e+02	3.3	0.1	21	44	198	221	192	229	0.84
7	17	0.55	1.4e+03	1.4	0.2	20	30	225	235	218	252	0.77
8	17	0.048	1.2e+02	4.8	0.1	21	46	254	279	246	286	0.83
9	17	0.14	3.6e+02	3.3	0.0	21	44	282	305	276	313	0.84
10	17	0.61	1.5e+03	1.3	0.0	21	46	310	335	302	341	0.79
11	17	0.2	5.1e+02	2.8	0.1	20	43	337	360	331	365	0.81
12	17	0.16	4.1e+02	3.1	0.0	21	44	366	389	359	399	0.84
13	17	0.76	1.9e+03	1.0	0.0	22	45	395	418	389	425	0.81
14	17	0.13	3.3e+02	3.4	0.0	21	44	422	445	416	455	0.84
15	17	0.13	3.2e+02	3.4	0.0	21	44	478	501	472	511	0.84
16	17	0.56	1.4e+03	1.4	0.0	21	45	506	530	498	537	0.79
17	17	0.061	1.6e+02	4.5	0.1	21	44	534	557	528	563	0.84

Sequence Information

Coding Sequence: ATGGATAAGAAATCTTATCAGTGTGAAGTCTGTGATAAGTCGTTCGCTGTAAGAGGTAGTTTGATGGTACACAGACGAACACACGCTGGCAAAAAACCATACGCATGCAATGTATGCGGCAAGTCGTTCACTGTAAGTGGTAGTTTGGTGGTACACAGACGAATACACACTGGAGAAAAACCATACACATGCAATGTATGCGGCATGTCGTTCGCTGTAAATAGTAGTTTGATGGTACACAGACGAATACACACTGGAGAAAACCCGTACGCTTGCGATATATGCGAAAAGTCGTTCAACCAAAGCAGTAGTTTGATGGTACACAGACGAATACacactggagaaaaaccgtatgCTTGCGATATATGCGAAAAGTCGTTCTCTGCAAGTAATGACTTAACGAAACAtaaacgcacacacactggtgacaaaccctacgcatgcgatgtatgcgatAAGTCGTTCGCTGTCAGTAGCAATTTGACGGTACACAGACGAATGCacactggagaaaaaccgtacgctTGCGATATATGCGAAAAGTCGTTCAGCCAAAGCGGTAGTTTGGTGGCACACAGACGAATACacactggagaaaaaccgtacgcatgcgatatatgcgaaAAGTCGTTCTCTGCAAGTAATGACTTAACGAAACAtaaacgcacacacactggaGAAAAACCATACACATGCAATGTATGCGGCAAGTCGTTCGCTGTAAATAGTAGTTTGATGGTACACAGACGAATACACACTGGAGAAAACCCGTACGCTTGCGATATATGCGAAAAGTCGTTCAACCAAAGCAGTAGTTTGATGGTACACAGACGAATACacactggagaaaaaccgtatgCTTGCGATATATGCGAAAAGTCGTTCTCTGCAAGTAATGACTTAACGAAACAtaaacgcacacacactggtgacaaaccctacgcatgcgatgtatgcgatAAGTCGTTCGCTGTCAGTAGCAATTTGACGGTACACAGACGAATGCacactggagaaaaaccgtacgctTGCGATATATGCGAAAAGTCGTTCAGCCAAAGCAGTAGTTTCATGGCACACAGACGAATACACACTGGAGAAAACCCGTACGCTTGCGATATATGCGAAAAGTCGTTCTCTGCAAGTAATGACTTAACGAAACAtaaacgcacacacactggtgacaAACCCTAtgcatgcgatgtatgcgatAAGTCGTTCAGCCAAAGCGGTAGTTTGGTGGCACACAGACGAATACacactggagaaaaaccgtatgCTTGCGATATATGCGAAAAGTCGTTCTCTGCAAGTAATGACTTAACGAAACAtaaacgcacacacactggtgacaaaccctacgcatgcgatgtatgcggCATGTCGTTCGCTGTAAATAGTAGTTTGATGGTACACAGACGAATACacactggagaaaaaccgtacgctTGCGATATATGCGAAAAGTCGTTCTCTGCAAGTAATGACTTAACGAAACAtaaacgcacacacactggtgacaaaccctacgcatgcgatgtatgcgatAAGTCGTTCAGCCAAAGCGGTAGTTTGGTGGCACACAGACGAATACacactggagaaaaaccgtacgcatgcgatatatgcgaaAAGTCGTTTACGACAAGTAGCAATTTGGTGTCCCACAAGAGGATGCACATTGCACACTGA
Protein Sequence: MDKKSYQCEVCDKSFAVRGSLMVHRRTHAGKKPYACNVCGKSFTVSGSLVVHRRIHTGEKPYTCNVCGMSFAVNSSLMVHRRIHTGENPYACDICEKSFNQSSSLMVHRRIHTGEKPYACDICEKSFSASNDLTKHKRTHTGDKPYACDVCDKSFAVSSNLTVHRRMHTGEKPYACDICEKSFSQSGSLVAHRRIHTGEKPYACDICEKSFSASNDLTKHKRTHTGEKPYTCNVCGKSFAVNSSLMVHRRIHTGENPYACDICEKSFNQSSSLMVHRRIHTGEKPYACDICEKSFSASNDLTKHKRTHTGDKPYACDVCDKSFAVSSNLTVHRRMHTGEKPYACDICEKSFSQSSSFMAHRRIHTGENPYACDICEKSFSASNDLTKHKRTHTGDKPYACDVCDKSFSQSGSLVAHRRIHTGEKPYACDICEKSFSASNDLTKHKRTHTGDKPYACDVCGMSFAVNSSLMVHRRIHTGEKPYACDICEKSFSASNDLTKHKRTHTGDKPYACDVCDKSFSQSGSLVAHRRIHTGEKPYACDICEKSFTTSSNLVSHKRMHIAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00941986;
90% Identity: iTF_00941986;
80% Identity: iTF_00941986;