Meup059234.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- ZSCAN16
- Assembly
- GCA_949089665.1
- Location
- CARXXK010001550.1:57723-59614[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 28 6.9 0.0 20 43 29 52 21 62 0.84 2 12 0.74 1.9e+03 1.0 0.1 21 40 58 77 53 84 0.74 3 12 0.022 56 5.9 0.0 20 44 85 109 78 118 0.84 4 12 0.31 7.8e+02 2.2 0.2 15 34 108 127 106 145 0.72 5 12 0.59 1.5e+03 1.3 0.1 20 32 141 153 134 169 0.72 6 12 0.41 1e+03 1.8 0.1 20 41 169 190 162 196 0.73 7 12 0.36 9.1e+02 2.0 0.1 20 43 197 220 190 225 0.75 8 12 0.028 72 5.5 0.0 20 43 225 248 219 254 0.86 9 12 0.0034 8.5 8.5 0.0 19 43 252 276 247 281 0.86 10 12 2 5.2e+03 -0.4 0.0 22 43 283 304 277 308 0.81 11 12 0.097 2.5e+02 3.8 0.1 20 43 309 332 302 341 0.83 12 12 0.68 1.7e+03 1.1 0.1 20 31 337 348 332 366 0.70
Sequence Information
- Coding Sequence
- ATGGAGAAGAAATCTTACCCATGTGATGTCtgtgacaagtcgttctctgtgagtagcAATTTGATGGCACATCGACGaacgcacactggcgaaaaaccgtacgcgtgcgatgtatgcgacaagtatTTCACTCAAAGTGGCAATTTGACATTACATAGACTcacgcacactggtgaaaaaccgttcgcgtgcgatatatgcgacaagtcgttctctgtgagtagcCATTTGATGGCACATCGACgaacgcacactggtgaaaaaccgtacgcgtgcgatgtatgtgacaagtattTCACTCAAAGTGGCGATTTGACAAAACATAGACgaacgcacactggtgaaaaaccgtacgcatgcgatatatgcgacaagtcgttctctgtaaaTAAAAGTTTGACTGCACATCGACGtacgcacactggcgaaaaaccgtacgcatgcgatatatgcgacaagtcgttctctgtaaaTAAAAGTTTGACTGCACATCGACGtacgcacactggcgaaaaaccgtacgcatgcgatatatgcgacaagtcgttctctgtgagtagcCATTTGACATCACATCGACgaacgcacactggtgaaaaaccgtacgcatgcgatatatgcgacaagtcgttctctgtggGTAGCAATTTGATGGCACATCGACgaacgcacactggtgaaaaaccgtacgcgtgcgatgtatgtgacaagtattTCACTCAAAGTGGCGATTTGACAAAACATAGACTcacgcacactggcgaaaaaccgtacgcatgcgatatatgcgacaagtatTTCACTCAAAGTGGCAATTTGACATCACATAGACGcacgcacactggcgaaaaactgtacgcatgcgatatatgcgacaagtcgttctctgtgagtagcAATTTGATGGCACATCGACgaacgcacactggtgaaaaaccgtacgcatgcgatgtatgcaacaagtcgttctctgtgagtagcAATTTGATGGCACATCGACGtacgcacactggtgaaaaaccgtatgcatgcgatatatgcgacaagtcgttctcttcgttctctgtgagtaACAATTTGACGGTTCACAAGAGGACACACACGAAACACTGA
- Protein Sequence
- MEKKSYPCDVCDKSFSVSSNLMAHRRTHTGEKPYACDVCDKYFTQSGNLTLHRLTHTGEKPFACDICDKSFSVSSHLMAHRRTHTGEKPYACDVCDKYFTQSGDLTKHRRTHTGEKPYACDICDKSFSVNKSLTAHRRTHTGEKPYACDICDKSFSVNKSLTAHRRTHTGEKPYACDICDKSFSVSSHLTSHRRTHTGEKPYACDICDKSFSVGSNLMAHRRTHTGEKPYACDVCDKYFTQSGDLTKHRLTHTGEKPYACDICDKYFTQSGNLTSHRRTHTGEKLYACDICDKSFSVSSNLMAHRRTHTGEKPYACDVCNKSFSVSSNLMAHRRTHTGEKPYACDICDKSFSSFSVSNNLTVHKRTHTKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00942019;
- 90% Identity
- iTF_00942019;
- 80% Identity
- iTF_00942019;