Basic Information

Insect: Macrosiphum euphorbiae
Gene Symbol: -
Assembly: GCA_949089665.1
Location: CARXXK010001334.1:34884-36410[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.07 1.8e+02 4.3 0.0 20 44 29 53 22 63 0.83

2 17 3.3 8.4e+03 -1.1 0.1 22 43 59 80 53 84 0.81

3 17 0.033 84 5.3 0.0 14 43 79 108 75 117 0.83

4 17 0.74 1.9e+03 1.0 0.1 20 43 113 136 108 140 0.81

5 17 0.013 33 6.6 0.1 20 44 141 165 132 173 0.84

6 17 0.51 1.3e+03 1.5 0.2 20 43 169 192 163 197 0.83

7 17 0.0043 11 8.2 0.1 14 44 191 221 184 230 0.85

8 17 0.77 1.9e+03 1.0 0.1 21 43 226 248 221 252 0.83

9 17 0.032 82 5.3 0.0 14 43 247 276 242 285 0.84

10 17 1.6 4.1e+03 -0.1 0.1 20 41 281 302 276 308 0.75

11 17 0.013 33 6.6 0.4 20 44 309 333 302 343 0.84

12 17 0.57 1.5e+03 1.4 0.1 20 43 337 360 332 364 0.83

13 17 0.0043 11 8.1 0.1 14 44 359 389 355 399 0.84

14 17 0.39 9.8e+02 1.9 0.1 20 44 393 417 388 426 0.82

15 17 0.37 9.4e+02 2.0 0.0 14 43 415 444 408 455 0.81

16 17 1.7 4.4e+03 -0.2 0.1 20 40 449 469 443 476 0.74

17 17 0.012 31 6.7 0.0 20 43 477 500 470 505 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.07	1.8e+02	4.3	0.0	20	44	29	53	22	63	0.83
2	17	3.3	8.4e+03	-1.1	0.1	22	43	59	80	53	84	0.81
3	17	0.033	84	5.3	0.0	14	43	79	108	75	117	0.83
4	17	0.74	1.9e+03	1.0	0.1	20	43	113	136	108	140	0.81
5	17	0.013	33	6.6	0.1	20	44	141	165	132	173	0.84
6	17	0.51	1.3e+03	1.5	0.2	20	43	169	192	163	197	0.83
7	17	0.0043	11	8.2	0.1	14	44	191	221	184	230	0.85
8	17	0.77	1.9e+03	1.0	0.1	21	43	226	248	221	252	0.83
9	17	0.032	82	5.3	0.0	14	43	247	276	242	285	0.84
10	17	1.6	4.1e+03	-0.1	0.1	20	41	281	302	276	308	0.75
11	17	0.013	33	6.6	0.4	20	44	309	333	302	343	0.84
12	17	0.57	1.5e+03	1.4	0.1	20	43	337	360	332	364	0.83
13	17	0.0043	11	8.1	0.1	14	44	359	389	355	399	0.84
14	17	0.39	9.8e+02	1.9	0.1	20	44	393	417	388	426	0.82
15	17	0.37	9.4e+02	2.0	0.0	14	43	415	444	408	455	0.81
16	17	1.7	4.4e+03	-0.2	0.1	20	40	449	469	443	476	0.74
17	17	0.012	31	6.7	0.0	20	43	477	500	470	505	0.86

Sequence Information

Coding Sequence: ATGGAGAAGAAAACTTATCCGTGCGACGTATGTGACAAGTCATATGCCGAAAGTGGCAAATTAACGAATTATCGAAGGATGCACACAGGCGAGAAAccatacgcatgcgatgtatgcgacaagttgTTTAGTCAAAGTGGCCATCTGACGGCTCACCGACGAACACACACAGGCAAGAAACCATACGCATGTGAcgtatgcgacaagtcatttGCTAATAGTGGCCAATTAACGAAACATCGACGGACGCACACAGGCGAGAAAccatacgcatgcgatgtatgcgacaagttgTTTAGTCAAAGTGGCCATCTGACGGCTCACCGACGAACACACACAGGCGAGAAAccatacgcatgcgatgtatgtgacaagtcgtttGCCGAAAGTAAAACATTGACGATTCATCGACGAACACACACAGGCGAGAAAccatacgcatgcgatgtatgcgacaagtcgtttaGTCAAAGTAGTAATCTGATAACTCACCGACGAACACATACAGGCGAGAAACCATACGCATGCGAcgtatgcgacaagtcatttGCTAATAGTGACCAATTAACGAAACATCGACGGACGCACACAGGCGAGAAACCATACGCATGCGAcgtatgtgacaagtcgtttAGTCAAAGTAGTAATCTGATGGCTCACCGACGAACACACACAGGCGAGAAACCATACGCATGTGAcgtatgcgacaagtcatttGCTAATAGTGGCCAATTAACGAAACATCGACGGACGCACACAGGCGAGAAAccatacgcatgcgatgtatgcgacaagttgTTTAGTCAAAGTGGCCATCTGACGGCTCACCGACGAACACACACAGGCGAGAAACCATACGCATGTGAcgtatgcgacaagtcatttGCTAATAGTGACCAATTAACGATCCATCGACGGACGCACACAGGCGAGAAACCATACGCATGCtgtgtatgcgacaagtcgtttaGTCAAAGTAGTAATCTGATAACTCACCGACGAACACATACAGGCGAGAAAccatacgcatgcgatgtatgcgacaagtcatttGCTAATAGTGACCAATTAACGAAACATCGACGGACGCACACAGGCGAGAAACCATACGCATGCGAcgtatgtgacaagtcgtttAGTCAAAGTAGTAATCTGATGGCTCACCGACGAACACACACAGGCGAGAAACCATACGCATGTGACGTGTGCGACAAGTCATTTGCTAATAGTGACCAATTAACGAAACATCGACGGACGCACACAGGCGAGAAACCATTTGCATGCggtgtatgcgacaagtcgtttgCCGAAAATAGTAATCTGATAACTCACCGACGAACACACACAGGCGAGAAACCATACGCATGTGAcgtatgcgacaagtcatttGCTAATAGTGGCCAATTAACGATTCATCGACGAACACACACAGGCGAGAAACCATATGCATGCggtgtatgcgacaagtcgtttaGTCAAAGTAGTAATCTGATGACTCACCGACGAACACACATTTGTGACAAGTAG
Protein Sequence: MEKKTYPCDVCDKSYAESGKLTNYRRMHTGEKPYACDVCDKLFSQSGHLTAHRRTHTGKKPYACDVCDKSFANSGQLTKHRRTHTGEKPYACDVCDKLFSQSGHLTAHRRTHTGEKPYACDVCDKSFAESKTLTIHRRTHTGEKPYACDVCDKSFSQSSNLITHRRTHTGEKPYACDVCDKSFANSDQLTKHRRTHTGEKPYACDVCDKSFSQSSNLMAHRRTHTGEKPYACDVCDKSFANSGQLTKHRRTHTGEKPYACDVCDKLFSQSGHLTAHRRTHTGEKPYACDVCDKSFANSDQLTIHRRTHTGEKPYACCVCDKSFSQSSNLITHRRTHTGEKPYACDVCDKSFANSDQLTKHRRTHTGEKPYACDVCDKSFSQSSNLMAHRRTHTGEKPYACDVCDKSFANSDQLTKHRRTHTGEKPFACGVCDKSFAENSNLITHRRTHTGEKPYACDVCDKSFANSGQLTIHRRTHTGEKPYACGVCDKSFSQSSNLMTHRRTHICDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00942454;
90% Identity: iTF_00941987;
80% Identity: iTF_00941987;