Meup028773.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000003.1:3934349-3936055[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.12 3e+02 3.5 0.0 21 43 110 132 93 138 0.81 2 13 0.5 1.3e+03 1.6 0.0 11 43 127 160 123 169 0.75 3 13 1.4 3.6e+03 0.1 0.0 21 43 166 188 154 193 0.80 4 13 0.00034 0.87 11.7 0.0 11 45 183 218 176 226 0.81 5 13 0.062 1.6e+02 4.4 0.0 21 44 250 273 236 282 0.84 6 13 1.6 4.1e+03 -0.1 0.0 22 43 279 300 274 311 0.82 7 13 0.62 1.6e+03 1.3 0.0 11 33 295 318 292 333 0.75 8 13 0.069 1.8e+02 4.3 0.0 22 43 335 356 326 366 0.85 9 13 0.13 3.3e+02 3.4 0.0 11 43 351 384 349 393 0.82 10 13 0.57 1.4e+03 1.4 0.0 11 32 379 401 372 416 0.77 11 13 0.00026 0.65 12.1 0.0 22 45 419 442 408 450 0.85 12 13 0.06 1.5e+02 4.5 0.0 21 44 474 497 461 507 0.84 13 13 0.00066 1.7 10.8 0.1 11 43 519 552 512 561 0.86
Sequence Information
- Coding Sequence
- ATGAATTCGGACAAGACAAATACAAGACAATTAAGGAAATCATTTTCAAATTCAAGTGATTTTAAAGTGAATAAATTTCAAACTAatcataataatcaaaaatgcAATATCTCTGATAAATTATTGAGCTCAAAAGCACTCATCACAAGACATTCTGAGATTCAAACCACTATAAGAAAAAAAGGTTTCGTTTGTGACAATTGTgaaaagatatattatactaaatcagATTTGATTGCACATATATTGTGTTGTATGGGGTCTGATATTTGTGATAAAGCGTCTTCTCAAGTAGGAGATTTAAAAAAGCATGAAAGGACATATACTGGAGATAAGCCTTATACATGTGACATCTGTAATAAAGGTTTTTCTCAAGCAGGAACGTTAAAAATCCATAAGAGATCACACACTGGAGAtgagccttataaatgtgacaTCTGTGATATAGGGTTTTCTCGAGCAGGTGATTTAAAAATGCATGAAAGGACACATACTGGAGataagccttataaatgtgacaTCTGTAATAAAGGTTTTTCTCAAGCAGGAACGTTAAAAATCCATAAGAGATCACACACTGGAGATAGGAATTATAAATGTGACATCTGTAATAAAGTGTTTTCTCAATCAAGTAACTTACAACagcataaaaaaacacatactgGAGataagccttataaatgtgacaTCTGTGATAAAGGGTTTTCTCGAGCAggtgatttaaaaatacatgaaaGGACACATACTGGAGATAAGCCTTTTAAATGTGACATCTGCGATAAAAGGTTTTTTCAAGCAAGCGATTTAAAAAGGCATGAAAGGACACATACTGGAGataagccttataaatgtgacaTCTGTAATAAAGGTTTTTCTCAAGCAGGAACGTTAAAAATCCATAAGAGATCACACACTGGAGataagccttataaatgtgacaTCTGTGATAAAGGGTTTTCTCGagcagttgatttaaaaatacacgaaaggacacatactggagataagccttataaatgtgacaTCTGTAATAAAGTGTTTTCTCAAGCAGGAACGTTAAAAATCCATAAGAGATCACACACTGGAGataagccttataaatgtgacaTCTGTAATAAAGGTTTTTCTCAAGCAGGAACGTTAAAAATCCATAAGAGATCACACACTGGAGataagccttataaatgtgacaTCTGTGATAAAGGGTTTTCTCGagcagttgatttaaaaatacacgaaaggacacatactggagataagccttataaatgtgacaTCTGTAATAAAGTGTTTTCTCAATCAAGTAACTTACAACagcataaaaaaacacatactgGAGataagccttataaatgtgacaTCTGTGATAAAGGGTTTTCTCGAGCAggtgatttaaaaatacacgaaaggacacatactggagataagccttataaatgtgacaTCTGCGATAAAAGGTTTTTTCAAGCAAGCGATTTAAAAAGGCATGAAAGGACACATACTGGAGataagccttataaatgtgacaTCTGTAATAAAGGTTTTTCTCAAGCAGGAACGTTAAAAATCCATAAGAGATCACACACTGGAGataagccttataaatgtgacaTCTGTAATAAAAGGTTTTCTCAATCAAGTAACTTACAACAGCATAAAATAACACATACTGGAGataagccttataaatgtgtTACCTGCGATTAA
- Protein Sequence
- MNSDKTNTRQLRKSFSNSSDFKVNKFQTNHNNQKCNISDKLLSSKALITRHSEIQTTIRKKGFVCDNCEKIYYTKSDLIAHILCCMGSDICDKASSQVGDLKKHERTYTGDKPYTCDICNKGFSQAGTLKIHKRSHTGDEPYKCDICDIGFSRAGDLKMHERTHTGDKPYKCDICNKGFSQAGTLKIHKRSHTGDRNYKCDICNKVFSQSSNLQQHKKTHTGDKPYKCDICDKGFSRAGDLKIHERTHTGDKPFKCDICDKRFFQASDLKRHERTHTGDKPYKCDICNKGFSQAGTLKIHKRSHTGDKPYKCDICDKGFSRAVDLKIHERTHTGDKPYKCDICNKVFSQAGTLKIHKRSHTGDKPYKCDICNKGFSQAGTLKIHKRSHTGDKPYKCDICDKGFSRAVDLKIHERTHTGDKPYKCDICNKVFSQSSNLQQHKKTHTGDKPYKCDICDKGFSRAGDLKIHERTHTGDKPYKCDICDKRFFQASDLKRHERTHTGDKPYKCDICNKGFSQAGTLKIHKRSHTGDKPYKCDICNKRFSQSSNLQQHKITHTGDKPYKCVTCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00941991;
- 90% Identity
- iTF_00941991;
- 80% Identity
- iTF_00941991;