Basic Information

Insect: Macrosiphum euphorbiae
Gene Symbol: -
Assembly: GCA_949089665.1
Location: CARXXK010000004.1:8466651-8478276[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6.9e-08 9e-06 27.8 0.9 1 23 285 307 285 307 0.98

2 8 5.3e-05 0.0069 18.7 2.2 1 23 313 335 313 335 0.98

3 8 1e-05 0.0013 20.9 0.5 1 20 341 360 341 361 0.95

4 8 0.00024 0.032 16.6 6.9 1 23 376 399 376 399 0.97

5 8 4.5e-06 0.00059 22.0 4.4 1 23 414 436 414 436 0.97

6 8 3.6e-06 0.00046 22.4 4.4 3 23 504 525 503 525 0.98

7 8 3.3e-07 4.3e-05 25.6 3.1 1 23 552 575 552 575 0.96

8 8 9e-05 0.012 17.9 0.2 1 23 585 607 585 607 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6.9e-08	9e-06	27.8	0.9	1	23	285	307	285	307	0.98
2	8	5.3e-05	0.0069	18.7	2.2	1	23	313	335	313	335	0.98
3	8	1e-05	0.0013	20.9	0.5	1	20	341	360	341	361	0.95
4	8	0.00024	0.032	16.6	6.9	1	23	376	399	376	399	0.97
5	8	4.5e-06	0.00059	22.0	4.4	1	23	414	436	414	436	0.97
6	8	3.6e-06	0.00046	22.4	4.4	3	23	504	525	503	525	0.98
7	8	3.3e-07	4.3e-05	25.6	3.1	1	23	552	575	552	575	0.96
8	8	9e-05	0.012	17.9	0.2	1	23	585	607	585	607	0.98

Sequence Information

Coding Sequence: ATGGCGCACGACGAGGAAGACGACGCGGCCGCCACGGCGGCCAGCTGCAGGTTGTGCTGCAGGCCTTCGGTGGCCGGCGATCAACGGCATCCGATCGTCACGGCCGTCAAAGCCGAGTACGGCGATGGCTGCGGCGGGACACGCCCCGGCGGCGGCTTGCGCGACACCATTGTCAAGCACCTGCGGATACAGGTTTCGGAGGATGATGGCTTGTCGCAAATAGTATGCTCTGAGTGCTTGCAGTTGTTAAACGAGTGGGAACAATTTTATGAGATGTGctcaaaaaataacaacatgGACCTGAAACAACTATCGGACGGAGAtgataaaaATGATGATGGTGATGAATTGGCGAACAATTTAGTAATTGACATAACTGATGAAGATGACGGACAAAGTTATACAAgCAAAGATAAAAGCAAGTCGGATGCACCCAAAAGATCATTCCTTGGGGAACCATCACCTGAAGATTATGTACTGATGAAAGAAGAGACTTTCAATTTAGAACCAGTTAAGAATGGACCAACAGGTGTTTTGGGTGACTATTTAATAGAGTACAACAATTCCAAAAAGTTACCAACAGATTTGAGTAATGCAGATAAAGACATTGTTGACAATTTACGCATCCGAAGAGAAGTTTTACCATCCATGTGGgatgtatttgaaaaaacaaTCGAAAAGCTAAAAtctgGAGAGTCGTATACTACACTAGTAACCCATAGGCGTTATATTATCAACAAAGGTGCATTTCCTTGTTCGTTGTGTGGTGAATGTTACGAGTTTGATCAGGGCGTTAGTCGCGATGAAGAAGAACCTCAACCACCAGTTGAAGTTGACATCCAGCAACGCCTATTCATTTGTCCTACCTGTGGGAAATCTTTCCCTCGTCGTAGCTCATGGAAACGTCATCAAATGACTCATGAAGATGTGAAGCCATATGTATGTCGAATTTGCACAAGTGGCTTCAATCGCAAAGAACATCTGATGCGCCACATGTTGTCCCATAGCACGGTTAGACCATTTCCGTGCGAACGGTGCGGTAAACGTTTTATACGCAAAGAACATTTAGCCAGACATCTTTTGTGTATACCAAGTTGTTCTAATTCGTCTGACATGCCGAGACCCTTCTGTTGTGATATTTGCAAACAGAGGTTTGTGCGTAAGGAACATCTGTTCAGACATAGAAAACGAGCCCACGAACATGCATTAATTTTGGATAATCAATTGGAAGAAAAACCATTTGTGTGTTGGCAGTGTGGAAAATGTTTCACCCGCTATGAACATCTGCGCAAACATTTGGATATCCACAACGGTATTATTCCATCTTCTTCGACAGAAATACTTCCTGAAGTGACTCTTTCAGAAATAAAGCCCGAAGAAACCTCAGTAGATATCAAAACAGAAAATGTATCTGATTCTGAAGGTGAACCTGAAATACTCCCTCCTGTGAGTGTGCTTGAACTCAACGAACAACAACCCGAACAAGCTAGACCAAAACCAAGTACTCTTTGTACTATTTGCAAAAAGACCTTCTCTCGCCGTAGTCATTTGTTACGCCATCTGAAGCGTATACACAAAGTAGAACCAGTGTTGACCAGGAGACGAGTACACAAATCTGGTGACGAAAACGGAAATTCTATAGATGAAACTAAATATGAATGTCATACGTGTGGGAAGACATTTTCCAGACCAGCTCATCTTGAGAGGcatgaaaaaaatttacacaGCGAAGAGCGTATGGTGCCTGCCCCATATGAATGTGTGTCTTGCGGCCAAGCCTTCTTCGATAGTAATTTACTCAATCAGCATATGGCAACACATGGAAATACTGTGACTGATGATTTTGTTTGGATGTGA
Protein Sequence: MAHDEEDDAAATAASCRLCCRPSVAGDQRHPIVTAVKAEYGDGCGGTRPGGGLRDTIVKHLRIQVSEDDGLSQIVCSECLQLLNEWEQFYEMCSKNNNMDLKQLSDGDDKNDDGDELANNLVIDITDEDDGQSYTSKDKSKSDAPKRSFLGEPSPEDYVLMKEETFNLEPVKNGPTGVLGDYLIEYNNSKKLPTDLSNADKDIVDNLRIRREVLPSMWDVFEKTIEKLKSGESYTTLVTHRRYIINKGAFPCSLCGECYEFDQGVSRDEEEPQPPVEVDIQQRLFICPTCGKSFPRRSSWKRHQMTHEDVKPYVCRICTSGFNRKEHLMRHMLSHSTVRPFPCERCGKRFIRKEHLARHLLCIPSCSNSSDMPRPFCCDICKQRFVRKEHLFRHRKRAHEHALILDNQLEEKPFVCWQCGKCFTRYEHLRKHLDIHNGIIPSSSTEILPEVTLSEIKPEETSVDIKTENVSDSEGEPEILPPVSVLELNEQQPEQARPKPSTLCTICKKTFSRRSHLLRHLKRIHKVEPVLTRRRVHKSGDENGNSIDETKYECHTCGKTFSRPAHLERHEKNLHSEERMVPAPYECVSCGQAFFDSNLLNQHMATHGNTVTDDFVWM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00309001;
90% Identity: iTF_00184788;
80% Identity: -