Meup040790.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000005.1:13318947-13329421[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.9 1.3e+03 2.1 0.0 7 21 131 145 126 146 0.88 2 14 0.11 15 8.2 5.1 1 23 180 202 180 202 0.96 3 14 0.0024 0.31 13.5 1.7 1 23 208 230 208 230 0.98 4 14 1.4e-05 0.0019 20.5 1.7 2 23 236 257 235 257 0.97 5 14 0.009 1.2 11.6 0.1 2 20 264 282 263 284 0.91 6 14 0.0024 0.32 13.4 1.3 2 23 304 325 303 325 0.95 7 14 6.4e-07 8.4e-05 24.7 2.4 1 23 355 377 355 377 0.99 8 14 3.7e-05 0.0048 19.2 1.6 1 23 383 405 383 405 0.98 9 14 0.00074 0.096 15.1 8.5 1 23 411 434 411 434 0.98 10 14 0.059 7.7 9.1 3.5 1 23 444 467 444 467 0.97 11 14 5.5e-05 0.0072 18.6 1.0 2 23 730 751 729 751 0.97 12 14 1.3e-05 0.0017 20.6 0.7 1 23 757 781 757 781 0.98 13 14 0.016 2.1 10.8 0.3 2 23 789 810 789 810 0.97 14 14 9.2e-05 0.012 17.9 0.3 1 23 816 838 816 838 0.98
Sequence Information
- Coding Sequence
- ATGGATGATCAACTAGATATTATGTTGGAAAATACCAATGAGGAATTTATTACCTTATCGTATGCTGATCATTCATTGACCTCTCAATCCGAACAATTATCTGATGAGTGTGCGGACATGAaTTTAGACCAGGATAATTGTCAAACTATGAGTGACATGGCTCCATTAAACGATTTGTTGTTGggacaaacatttttaatagagACTAACGAACAACCATTATTTGTAGATGGCGCAGAGTTAATTACATTCCAACATATTGACTCAAACGAACAAATAAATGATGTCGAgactatttcaaataatattgaatcTGATAAATCtcctattgaaaatattgattttactataaattcTGATGATCACTTCCAAGAAATTTGTACAGATTTTAATAAAACCACTAATGACAGTAATAACTTGACAGAACATTTACAAGTTAAGATCAACACTGATATAACTAGTGGGAACTACAGTAATTCAACTGCTATTAAAATTTTAGATGATGTCGCTAAAAGTCCTGTTGATACTAATggcCATTTTGTTTGTGATTTATGCTTACATGAATTTTACAACTGGAAACATTATAAGAAACATAAACTAGAACATTTAAATGATAAGCCgtttaaatgtttgaaatgtttaaaatcatttaattacaATaataattatttacttcacATTGCTTCTCATTCAacaagtaatttaaaatgtccaaaatgtaaaaaagaatttaaacgCTATGCTAGCTTTAAAGCACACctgaaaattcataaaactgAAGAATTAATTACATGCAATATTTGTGACAAAATATTTGACAAtcagtaTCGATTGGACATTCATAAAGAAAATTGCATACAAGAAAATTTACTGAATTCTGGTGAAGAAACATCTGTTGGTTGTATTAAAACTTGTACAATTTGTAATATGTCTTTTTCCACTGTATCAGAATATAAAATGCACAACAAAGAACATAGAAAatttgatTCAGTGTTGAGAAAATATCATAAACTTgctacaaaatttaaaaaaatacataaaacagctaataaaattaaaaaatttaaatgtgatCGTTGTGATTGGTCATTTAATAAGTCAAATCTTTTACGCCGACATATGAGAACACATACTGGCGAAAAACCATTTGAAtgcACGGATTGTTCAGTATACTTTACTCAGCAAAACTCATTAAATAGACATCTGATGAAACATAAAGGAATACGACCATTTAGATGCGAATTCTGTGAAATGAGTTTTTGTCAAAAAGgtcatttaattaatcatatgaaaaaatgtCATGCTGTTAAAAAAGAACCAACAAGAATTCATAAATGCTCCATGTGTTCGTGTGTTTACAACAGTATCAATGCTCTTAgtagacatttaaatattttccatgGAGTGAAAACtagaaatgtatacaaaaaGGTTCAAAAGAAAGAAACAAAGAGTGTAGAAACAGTTGATGAAAATAAACATTCtaataaagattcctCAAAGCTAAAACAATGGCTTGAAGAAGTAGCTTGTGAATTGCAAAGTGATGATGATAATGTAGagttaaagaatTGCAAAGAACCAGTTACTACGCAATGTGAATTTGGAATAAATTTGATTGAAAGTGAACACTATGATCACATTTTAAGCCCGATTTCTAATATAGCTAGTGATCACACTGAAATTGACAACTTGAGATATTCTCTTGCAgatggtaatagctatattattattgtgaagaagAAACAGGAGCAACCATCAATCAAAAATGCTGTTGTTCAAAAccaaGAAAAGGAACTAGTAACAACTGTCACTGAAAATGAATCAATATCACTAAATGTTGTAAAAGAAACTGCTAAAAAGgGAACGGAACCTATAACAACTGTTACTGAAAATGAATCAATACCATTAAGTGTTGTAGAAGAAACCACTACCACTAAAAAGCTTccttcaagaaaaaaaaaatgtgggaaTAAAATGTCTAAATTGGATGCAAAAAAGACTTTaccaaggaaaaaaaatgtgagtTCATCAAATTTGAAAAAGAAGAATTGTAACAGTGATAAAATTAAGAGAAATATAAGTCATCCAAGTAGTAAAGCTGAGCCAAAAGTTGTATATGTACCAAATATAGCTATTAATTCAGAAGATAAAACCATTAGTATTACGGAAAATCCATTGCCAAAAGTGTGTCAATTCTgtgagaaaatatttaaaaagaatgCCGATCTTGAAAGACACGAAAGAACACACACTGGTGACAAACCGTATAAATGCGAAGAACAGGATTGTAATAAAGCATTTGCCACTAAGAGTTCACTTGAATATCATAAAATCACCCATTCAGGTCAAATGAAACGAGCAGAGTGCCCCCAGTGTAATGGATTATTTGCTACAACGACAACTTTGAAAGTTCACTTGCGACAACACACAGGTGAAAAACCATTTAAGTGTCCTGTATGCGGTGATGCATTTCGAACAACTGGACACTTACAAACACATGTGATAATTCACGAACGAAAAAAGAAAAGCAAATAA
- Protein Sequence
- MDDQLDIMLENTNEEFITLSYADHSLTSQSEQLSDECADMNLDQDNCQTMSDMAPLNDLLLGQTFLIETNEQPLFVDGAELITFQHIDSNEQINDVETISNNIESDKSPIENIDFTINSDDHFQEICTDFNKTTNDSNNLTEHLQVKINTDITSGNYSNSTAIKILDDVAKSPVDTNGHFVCDLCLHEFYNWKHYKKHKLEHLNDKPFKCLKCLKSFNYNNNYLLHIASHSTSNLKCPKCKKEFKRYASFKAHLKIHKTEELITCNICDKIFDNQYRLDIHKENCIQENLLNSGEETSVGCIKTCTICNMSFSTVSEYKMHNKEHRKFDSVLRKYHKLATKFKKIHKTANKIKKFKCDRCDWSFNKSNLLRRHMRTHTGEKPFECTDCSVYFTQQNSLNRHLMKHKGIRPFRCEFCEMSFCQKGHLINHMKKCHAVKKEPTRIHKCSMCSCVYNSINALSRHLNIFHGVKTRNVYKKVQKKETKSVETVDENKHSNKDSSKLKQWLEEVACELQSDDDNVELKNCKEPVTTQCEFGINLIESEHYDHILSPISNIASDHTEIDNLRYSLADGNSYIIIVKKKQEQPSIKNAVVQNQEKELVTTVTENESISLNVVKETAKKGTEPITTVTENESIPLSVVEETTTTKKLPSRKKKCGNKMSKLDAKKTLPRKKNVSSSNLKKKNCNSDKIKRNISHPSSKAEPKVVYVPNIAINSEDKTISITENPLPKVCQFCEKIFKKNADLERHERTHTGDKPYKCEEQDCNKAFATKSSLEYHKITHSGQMKRAECPQCNGLFATTTTLKVHLRQHTGEKPFKCPVCGDAFRTTGHLQTHVIIHERKKKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019589;
- 90% Identity
- iTF_00019589;
- 80% Identity
- -