Meup051091.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010001085.1:4728379-4734143[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.5 3.9e+04 -3.7 0.0 60 71 76 87 69 91 0.70 2 3 1.2e-14 6.8e-11 43.5 0.0 9 72 111 182 106 185 0.88 3 3 2.5 1.5e+04 -2.4 0.0 31 40 309 318 285 319 0.76
Sequence Information
- Coding Sequence
- ATGGATAAATCAAAGGGGAAGAAATCTGCTGGTTTAGAagaaacCAATAAACCAGAACAACATTTTATTGGATTTGATATCGATGATGATGTATtgctaatgattgaaaaaaagaaaatgtTTTTAAAATTGGAACTAAGTAAAGAAAAAAGTAAACCTATGAAAGTAGAAGAGCCACCAATTGATAATAACAATCATGTTAATAAAGAGATACAGTCTAAATCAAGTAaactaACTACTCCAAAATTCAACTTTACCTCCACTAACGCTAGAACACACCATAGAACGGGTAAACAAATTAATGTTGATATCAGTGATGCTATTTATAAAATTCCATTTGAGCATggTTGGAAACGAGAATTAGTGTACAGAACATCAGGTGAATCTACTATTCTTAATCCCACAAATAGAGATGTTGATGTATACTATTATTCTCCGACTAACCGAAAACTTAGATCATTACGAGAAATTCAAGACATCTTATCTGATAATGACATCTTATCTGATAATGATCTAACCATAgaaagttttacatttttaaaacaaccaATTGGCATGAATGATCAATCTAAAGAACTTATCAAAGATGCAAATTCTAAATTATCTAaaGAAGACTCTTTTGTTGATGTTGCTGTCAGACCTAACAAATCTAAGGCaccattttattatgaattgtcAGATGATGAAAACAACAAGTCTTCGAGAcaaatgaaaattgtttttaaaaaggcTAAGAGGTCCTCTAGATCGAAAtctaaaaaagGTATTTCAGAATCAATGAATACATCTTTGTCTACACATGAAAACATATCTGAAGACTGCCAAGCTGTTCAATCTAGTGCATCACCAAAAGTTTCTTCTCCAAAATTTGAGAATATTGATATAAACAACGCAATAATTACAAGACGGTTGTCAACATCAGATGATGAAGTTATTATGCAGACACCTTGTGGGATATGGTGTCCGAATAACGATGAACCCGCCTCTTTAATGTGTGCACAATGTCTGGTCCACTATCATCAAGCATGTGTCAATTTAAATGCTAATTAA
- Protein Sequence
- MDKSKGKKSAGLEETNKPEQHFIGFDIDDDVLLMIEKKKMFLKLELSKEKSKPMKVEEPPIDNNNHVNKEIQSKSSKLTTPKFNFTSTNARTHHRTGKQINVDISDAIYKIPFEHGWKRELVYRTSGESTILNPTNRDVDVYYYSPTNRKLRSLREIQDILSDNDILSDNDLTIESFTFLKQPIGMNDQSKELIKDANSKLSKEDSFVDVAVRPNKSKAPFYYELSDDENNKSSRQMKIVFKKAKRSSRSKSKKGISESMNTSLSTHENISEDCQAVQSSASPKVSSPKFENIDINNAIITRRLSTSDDEVIMQTPCGIWCPNNDEPASLMCAQCLVHYHQACVNLNAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -