Meup051076.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010001085.1:4592034-4597018[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 4.5e-14 2.6e-10 41.7 0.1 10 72 99 161 93 164 0.92 2 5 4.2 2.5e+04 -3.1 0.0 11 25 209 223 202 227 0.75 3 5 6.1e-14 3.6e-10 41.2 0.1 10 72 298 360 292 363 0.92 4 5 4.2 2.5e+04 -3.1 0.0 11 25 408 422 401 426 0.75 5 5 4.5e-14 2.6e-10 41.7 0.1 10 72 497 559 491 562 0.92
Sequence Information
- Coding Sequence
- ATGGACCTAAGTAAAAAACCTATGGAAGTCGATGATCCATCCATCACACAAAAGAAACAGTCTAAAGCAAAAATATCATCACAAGAAGctaataatgttaataagaatCCGGGTATTAAGAGACataagaaatacaatttacGCAGTTATGTCTTGGAATCTTTGGAATTACAAGTTCCCTCTACTTCAAaacttGGTACTCCGACGTACAACCTTACCTCTTCTAACTCTAGAACACGCCATAGTACTGCTAGACAAATTAATGTTGATATCAGGGATGCTATTTATAAACGTCCATTTGAGCATggtTGGAAAAGAGAATTAGTATACAGAAAATTAggtcaatcaaaatataaaattggtgATGTATACTATTGTTCTCCGACTAACCAAAAACTTAGATCATTACGagaaattcaaaaacaattggAGATCTTATCTGATAATGATCTAACCACagaaaattttacatttttacaacaacCAATTGGCATGAATGATCAATCTAAAGAACTTGTCAGAGATGCATTTTCTAAATTATCTAAAGAAAACTCTTTTGCTGTTGGACCTAAAATATCTGAGGCACCTGATGAAAACAACAAGTCGTCAAGTAcaatgaaaattgttttaaaaaattttaagaggTCCTCTAGATTGAGAtctaaaaatgTATCATCACAAGAAgctaataatgttaataaaaatccGGGTATTAAGAGACAAAATAGATACAATTTACGCAGTTATTCATCAGAATCTTTGGAATTACAAGTTCCCCCTACTTCAAaacttGGTACTCCGACGTACAACCTTACCTCTTCTAACACTAGAACACGCCATAGTACTGCTAGACAAATTAATGTTGATATCAGGGATGCTCTTTATAAACGTCCATTTGAGCATggtTGGAAAAGAGAATTAGTATACAGAAAATTAggtcaatcaaaatataaaattggtgATGTATACTATTGTTCTCCGACTAACCAAAAACTTAGATCATTACGAGAAATTCAAGAACAATTGGACATCTTATCTGATAATGATCTAACCACagaaaattttacatttttacaacaacCAATTGGCATGAATGATCAATCTAAAGAACTTGTCAGAGATGCATTTTCTAAATTATCTAAAGAAAACTCTTTTGCTGTTGGACCTAAAATATCTGAGGCACCTGATGAAAACAACAAGTCGTCAAGTAcaatgaaaattgttttaaaaaattttaagaggTCCTCTAGATTGAGAtctaaaaatgtaTCATCACAAGATgctaataatgttaataaaaatccGGGAATTAAGAGACataagaaatacaatttacGCAGCTATGCTTCAGAATCTCTGGAGTTACAAGTTCCCCCTACTTCAAaacTTGGTACTCTGACGTTCAACCTTACCTCTTCTAACACTAGAACACGCCATAGTACTGCTAGACAAATTAATGTTGATATCAGGGATGCTCTTTATAAACGTCCATTTGAGCATggtTGGAAAAGAGAATTAGTATACAGAAAATTAggtcaatcaaaatataaaattggtgATGTATACTATTGTTCTCCGACTAACCAAAAACTTAGATCATTACGagaaattcaaaaacaattggAGATCTTATCTGATAATGATCTAACCACagaaaattttacatttttacaacaacCAATTGGCATGAATGATCAATCTAAAGAACTTGTCAGAGATGCATTTTCTAAATTATCTAAAGAAAACTCTTTTGCCGTTGGACCTAAAATATCTGAGGCACCTGATGAAAACAACAAGTCGTCAAGTAcaatgaaaattgttttaaaaaatagtaagaGGTCCTCTAAATTGAGAtctaaaaatgtaTCATCACAAGATGCTAATGATGTCAATAAGAATCCGGGTATTAAGAGACATAAGAAATGA
- Protein Sequence
- MDLSKKPMEVDDPSITQKKQSKAKISSQEANNVNKNPGIKRHKKYNLRSYVLESLELQVPSTSKLGTPTYNLTSSNSRTRHSTARQINVDIRDAIYKRPFEHGWKRELVYRKLGQSKYKIGDVYYCSPTNQKLRSLREIQKQLEILSDNDLTTENFTFLQQPIGMNDQSKELVRDAFSKLSKENSFAVGPKISEAPDENNKSSSTMKIVLKNFKRSSRLRSKNVSSQEANNVNKNPGIKRQNRYNLRSYSSESLELQVPPTSKLGTPTYNLTSSNTRTRHSTARQINVDIRDALYKRPFEHGWKRELVYRKLGQSKYKIGDVYYCSPTNQKLRSLREIQEQLDILSDNDLTTENFTFLQQPIGMNDQSKELVRDAFSKLSKENSFAVGPKISEAPDENNKSSSTMKIVLKNFKRSSRLRSKNVSSQDANNVNKNPGIKRHKKYNLRSYASESLELQVPPTSKLGTLTFNLTSSNTRTRHSTARQINVDIRDALYKRPFEHGWKRELVYRKLGQSKYKIGDVYYCSPTNQKLRSLREIQKQLEILSDNDLTTENFTFLQQPIGMNDQSKELVRDAFSKLSKENSFAVGPKISEAPDENNKSSSTMKIVLKNSKRSSKLRSKNVSSQDANDVNKNPGIKRHKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -