Malb022140.1
Basic Information
- Insect
- Macrophya alboannulata
- Gene Symbol
- -
- Assembly
- GCA_949628255.1
- Location
- OX451210.1:15304101-15306821[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.18 23 6.6 5.3 1 23 115 138 115 138 0.94 2 14 1.8 2.3e+02 3.4 1.3 2 20 203 218 202 222 0.70 3 14 0.00098 0.12 13.7 2.7 2 23 320 341 319 341 0.96 4 14 0.89 1.1e+02 4.4 0.3 5 20 429 444 427 446 0.87 5 14 0.2 26 6.4 1.4 1 23 612 634 612 634 0.97 6 14 0.21 26 6.4 0.2 5 23 643 662 641 662 0.95 7 14 0.4 50 5.5 0.1 2 21 667 686 666 687 0.92 8 14 0.00029 0.037 15.4 0.1 1 23 702 725 702 725 0.97 9 14 7 8.8e+02 1.6 1.2 1 13 732 744 732 755 0.80 10 14 0.21 27 6.4 0.6 3 23 761 781 760 781 0.91 11 14 0.00017 0.021 16.1 2.1 2 23 787 809 786 809 0.96 12 14 2.2 2.8e+02 3.2 4.3 2 23 818 838 817 838 0.85 13 14 0.0034 0.43 12.0 1.1 2 23 843 865 842 865 0.92 14 14 0.00016 0.02 16.2 0.1 2 21 874 893 873 894 0.94
Sequence Information
- Coding Sequence
- atggaatcgCATTCAAACGGGCAGAATCCTTACCGATTAAAAGCTCCTGTCATCAAACTGGAGAGGTGCGACAAGATATGGAAAACGCTTCAGCTGATAAGAAGCATGCAAGACAAACACCTTGAAGATATTCAAGATTGGATAAAAAGGGAACCAATAACATCTGAGAAAACTTCAAGGAAAGAACCACCGATGACCTATATACCTGATAAATCATTGCCTCTCAATTTAATAGGTGAACCAAATTTGCCAAGACCATACATAAAGTATTGCCCAATGTTTAACAACGGTAATGAATCATTGCCACAATTTCAATTGGCTGAAAAAAGTCGTGTTAATTTATATCATTGCGAAATTTGTAGTAAGGAGTATTGCGATTATAAAAGATTCACCAATCATCAAGATCAAGTACATGGAATTTTAATCCCAAAGAAATTGACagctaaaaaagaaaaggttcATAATAGAGGTAacattgattttaaaaatgggCGTCATTCAACTGagagtaataataatcttcaatcgaacaaaaaattagtaccggatgaaaatattgatctGCAAACTATTGTTAAGAATTCTTTGCAGCATAACGATAATATTAGATGTAAATTATGTAGCAAATATTTTAAGAATATCAAAAAACACATGATAGATTATCATAAAATTAGGTGCATCGGAGTACTGAGCAAAGTAACTGATCagaattcgaattttgatcAAGAAGGATCTTTGACTGTACTTGAGTCTGTTAGTTATAATTTGCCGGAAGATGTAGAGCAGACTGCTGAGCAAACAAAACAAATAACGTCACCAGATGTTAATTTTCCTGTTCAAAACACGACAAATGTAGCCAAACGGAAACTGAGCATGCCTAATAACGGACTTTGCAAAAAGGTTCGTAGATCTAGTTCTCGGGAAGAAAAATtagatacaaaaattgaacagCCATTAAAATGCGAGATTTGCGACAGAGAATATGCCAACTATAAGACGCTGTGTAAACATAGGGATAGGCACAAGAATCAAAACGAAGAGAAACAATCTTTGGAGACTAAGACAAACGGGAACGAGTCTGTCGATCCGGCATCATCATCTAAAACGAATCCAgatatttttgttaaattcaCACAAGATAAAGATAGGGATAATAGTAATAGTCATAAAATACCCCGAACTAGATCTAGTTTTACCAAAGAACGTAGTAGTTTAGATACAttagaaaacgaaaatgtGTTATCATTGGATAAAAAAGAACAGACAAGTTTGCCAATAAAATGTGTGTGCGGCAGAACTTTTCGCACAACATCCATTCTTTCCAATCATAAGATGGGTTGTAAATTTGTAAACGGTATGGACATCTGTAAATCTTCCGATACACGAACTGGCAGCGACAGAGATTTAGGGATCAGCAtaactattaaaaaaaagaataactCTTATGAAATAGTGAGTAAAGACTGTAGCGACGATGAGCCTATTAAAAATGTTCACAAGATAGAAGAGACTGAAATATGCGAGGAGACTTCAGATTCATCATCGGACAATTCGGACAGCAGCGAGTTTGACGATCAGCCAGAAAACCTTGTACCAGaaaagtcaaaatacagcGAGAatcatagaattttgaaattaaaattagtaGACGAAGATGTGGATATTGATATTGAGGATGAAAATGAGATTGTATCCGATGAAACTTGCAACACAGTAGCTGAGAATAATAACAGCAACATTTCTTCTGTGAATAAACAGCAGGTCTCATTGTTGAGAGTTTTGTGCAAGAAGTTTCTTGTTCAACAAGGTATTATGCCAAAAGAAGAGACGTCACACAAGTGTCAGATATGTAAAATATTCCTTGGCAGTAAGGAAAGATTGTCAAAGCACGCCGAGATGCAcaagaaattaatgaaaagatCTTGTGGATGCGGTATAAAATTTACTGATACAAAAACATTTGATGATCACATTGCGACTGTTCATCCAAAGAATATCTCATGCCCGTATTGTTATgaaaagtatataagtatagcCGGATTAAGCGAGCACTTGTGCGTTGTCACTCGGGGAGCACCGTACATAGAAACTTTCAACGAAAATTATCCTTGCCCAAATTGTAATATTGCTTTCAATAATATCACCTGGTTAGATAGTCACATGAAGTCCAAACACTTAGATCCAAATTTACCTTTCCAGTGCTATCATTGCTTGGAGAAGTTTCCCGATGAAATAGCAAGGAGCTTACACTCGCATGAAAAGCACAATGATATATCGGCATGTCCTATTTGTAATCAGAAATTTCAGAGTGTTAAGACTAAACAAAAACACGAAGCGTATCATCGAGGAGTTGGAATTCCGTGTCACATTTGTAAGAAGACTTATCGTTCAAGAAAGAATCAAGTTAATCATGTTAGGACTGTTCATAGTGATTTTAGTAACGACAAATTGACATGCCATATTTGTCAAAAAAGCATGAAAACTAAGTCATTTAGGAAACATGTACTCAAACACAGTAGTATTTTAAAATGTGAAATGTGTGATAAGGTGGTATATGACTTTAGAAATTTAGAAAGCCACATTACTGACTGCCATGGTAACGAAAATTATCCACGTAAGAAGTGTAACACTTGCGGTGTGTCTTTTCCAACTAAAGAACAGTTGGAACTGCATATTATAGTCGACAAATCTGTGAGAAATGAACACTGCAAAAATGTGTAA
- Protein Sequence
- MESHSNGQNPYRLKAPVIKLERCDKIWKTLQLIRSMQDKHLEDIQDWIKREPITSEKTSRKEPPMTYIPDKSLPLNLIGEPNLPRPYIKYCPMFNNGNESLPQFQLAEKSRVNLYHCEICSKEYCDYKRFTNHQDQVHGILIPKKLTAKKEKVHNRGNIDFKNGRHSTESNNNLQSNKKLVPDENIDLQTIVKNSLQHNDNIRCKLCSKYFKNIKKHMIDYHKIRCIGVLSKVTDQNSNFDQEGSLTVLESVSYNLPEDVEQTAEQTKQITSPDVNFPVQNTTNVAKRKLSMPNNGLCKKVRRSSSREEKLDTKIEQPLKCEICDREYANYKTLCKHRDRHKNQNEEKQSLETKTNGNESVDPASSSKTNPDIFVKFTQDKDRDNSNSHKIPRTRSSFTKERSSLDTLENENVLSLDKKEQTSLPIKCVCGRTFRTTSILSNHKMGCKFVNGMDICKSSDTRTGSDRDLGISITIKKKNNSYEIVSKDCSDDEPIKNVHKIEETEICEETSDSSSDNSDSSEFDDQPENLVPEKSKYSENHRILKLKLVDEDVDIDIEDENEIVSDETCNTVAENNNSNISSVNKQQVSLLRVLCKKFLVQQGIMPKEETSHKCQICKIFLGSKERLSKHAEMHKKLMKRSCGCGIKFTDTKTFDDHIATVHPKNISCPYCYEKYISIAGLSEHLCVVTRGAPYIETFNENYPCPNCNIAFNNITWLDSHMKSKHLDPNLPFQCYHCLEKFPDEIARSLHSHEKHNDISACPICNQKFQSVKTKQKHEAYHRGVGIPCHICKKTYRSRKNQVNHVRTVHSDFSNDKLTCHICQKSMKTKSFRKHVLKHSSILKCEMCDKVVYDFRNLESHITDCHGNENYPRKKCNTCGVSFPTKEQLELHIIVDKSVRNEHCKNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00939930;
- 90% Identity
- iTF_00939930;
- 80% Identity
- -