Basic Information

Gene Symbol
snpc-4
Assembly
GCA_949628255.1
Location
OX451210.1:14418728-14421487[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.085 1.5e+02 3.5 0.0 16 43 254 286 248 289 0.75
2 5 2.5e-11 4.4e-08 34.0 0.1 1 45 295 341 295 342 0.97
3 5 1.1e-10 2e-07 31.9 0.1 3 44 352 397 350 399 0.96
4 5 4e-11 7.1e-08 33.3 0.0 1 45 405 450 405 451 0.94
5 5 1.8e-12 3.2e-09 37.6 0.2 1 41 455 495 455 496 0.97

Sequence Information

Coding Sequence
atgagcGATTTAGAGGACGAAGATGTAATTCTCGACGACATAAAAGCGTTGCAGGCGGTTTTAACCCAGAAACAAACAGCTCGAGTTAAAGTAGAGATAAAATCGGAAGATAGAATTTCGTTAACACCTAACCTATGCGAACCATCGACAtcaaaatccatcgatatccACCCTTCAACGTCGAACACGATTGAAGATTTAGCGGAAGCAGAAGAGAGCGATAATGAATGTAACTCTGAATCCGAAGAAGATGACGACGATTTAGAGAATTTATCAGACCCGGAAGCTGcgttaaatttgaataaaaaaatcgtacatcTTTTAGCAACAGCTCAAAGTCGTCTCCATCTCCTTCTAAAAGAATGTAAAAGACGCCAATCATTAATAGACCAAAAAATACGTCAAAGAACTTCTGATCCACTAACTAGAACGCTTTTAACAGTAACTGGAATTCCTTATTTCAAAGACAAGCAGCATTTTCCAGCGCCACAGAATGAAGATGCAAAATTAAAGATGAGACGTGGAGAGTTGCAAATTATTGACTTGCCTTGTCCTCTGCGGTGGACATTGAAAGACAGGAATACATTATGGGAAGCAATTGCTTGGAATGCAAGAATCATTTATCACGAAGAACTGAGACAGCGGGAGCCCcgtgataatgaaaattcattgaataattCAGAAGATCCTCTGAGGCTGGACCATAATTATAGGGataaaaaattacttgaaGAAACGCTTAGGAACATTAAACCTTTGGTTGGTACATTGGGATGCAAAGAATTTGATTGGTTGAAAATAGCGGCGACTGATTTCAACGGAAGACATTCTGCCAACGAGTGCAGGGCGATGTGGAACGTATTTTTACACCCTGATATAAATAAAGGGAAATGGAAAAAGACTGAGGATTCTATTCTCAAGTCACTAGCCGAAGAATACAACTTTCAGAATTGGGACCTGGTGGCTAGTAGATTAGGAACAAACCGAAGCGGATATCAGTGCTTCATTAGatttaatacaaattttaaaaacaatatgTGCAGCAGAAATAGTTCGTGGTCAAAAGAAGAGGACCAGAAACTTACGGATGCTGTAAACGCCTTGAGAACTGGTAATTTTATTCCGTGGGGCGAAGTAGCCAAAGTAATGGGAGATAGAAGGAAACAGCAGATTTATATGCGATGGAATTACAGCTTAGCACCGAACTTAAAAAAGGGTAGATTCACTGAGGAAGAGGATAGGCTGCTTCTTCAAGGAGTTGCCAAATTTGGATCTAATTTTACTAAAATTTCTGTGGCCCTATTGCCACAGAGAAATACTGCGCAGTTAAACGATCACTACAGAACTCTtatgaatgagaaaaagaacaaTTGGAACTGCGAGGACGACATGAAATTGGTCAAGCTGTTCGACAAGTTTGGTAATAATTGGTCAGCTATTGCCAAAGAATTTGCAAACAAGTCTAGAGTACAAGTCAGACATCGGCATACTGCGATTATCCGATATCTTAGCAGAGGCCTTTCTATAAGGACTATACCTAGGTGGGGTCCCAAAATAGAAGTCAAAGATACTCAAGAAGATATATTGAACCGTGGAGAAAGGATGCTCGATGAGATGAGCGAGATGATGATGATTCAgcagagaaataaagaagaagcaAGGAGAGAGCAACTGTCTAAAATCGACCAGGAACTGAGAGATTATTTCAAAGCAATATATCGATCTCCTTCTAAACTCGGGAGACACAAGAAATTTTACTCTATTGAAGAGGTTGACGGAAAAACTCAGAAACTTAACATCATTTTGAATATGTTAAAAGCTGATCTTGATATTCCTGATGACTTAGAGGAGGAAGTATTCTTGACGGAGAAAGACAAGCAGCTACTAACTTCCTTGAAAGCATTTTCAAGAACTGAAACTTCGGAATCTGAGGCCCAACAAAAATACTTAGAACACATTAGGCGGAAGATGTTTGGATCATTAATTCCGTCAGCGAGTGCAGATCGTTTCATACCACCATTACCATTCAATGGAAAAGTCCAGAGAACTAAAGGAAAAAAGCTTGTAGGAATAAACTATTTTCCTAGTGGAGATAAATGTCTCGCCGAAATCAATCACGAACTTAATACACCAGAGACAATTATATCGTTAATCGGCGGCTGGGAAACCGAATTAGAATTTAATAATATGGAAAAGATATTTATTTCCGAGACTGAACAATCCAAAGAAGATTTATCTACGACAAATACTACTTTTGACCCTAATGCCCCAAGTACCTCTGGGATTGTTATCAATGAAAGTAGGAATGTTGGGCAGGAAATTTTATCGAACACAGAACAATCATCTCAAATAATCAGaagaaatttgtcaaaatattatCCAGAAGTTTTAATACCACCAAACTATACAACATTACTAGGTTTTCGCGGTTTATTGTTATCGAAACATATTCTTGAGGCAGAGGCTTCGGAAGAAGACGAATacgaagaagcagaagaatgTGTGATGACACCAGAGGGAGAAAAGGCTTTGGAATTATTTGAGGAGCGTCTGGTTAAACTCTTCAAATTTCCTATAGAATTGTCAGAAATAGCGCCGCCTGTATTACACGTATCACAAAATAGAGGATTCAATGATAGTGACAATGATGATGATTgcgggaaaaaaagaaaagcaaataAGACAAACTCCGGACCAGCAGCTAAGAGGAAAgcaaaagtcgaaaaaattgatgttgcAGAAAATTCCGAGGCTCAATAA
Protein Sequence
MSDLEDEDVILDDIKALQAVLTQKQTARVKVEIKSEDRISLTPNLCEPSTSKSIDIHPSTSNTIEDLAEAEESDNECNSESEEDDDDLENLSDPEAALNLNKKIVHLLATAQSRLHLLLKECKRRQSLIDQKIRQRTSDPLTRTLLTVTGIPYFKDKQHFPAPQNEDAKLKMRRGELQIIDLPCPLRWTLKDRNTLWEAIAWNARIIYHEELRQREPRDNENSLNNSEDPLRLDHNYRDKKLLEETLRNIKPLVGTLGCKEFDWLKIAATDFNGRHSANECRAMWNVFLHPDINKGKWKKTEDSILKSLAEEYNFQNWDLVASRLGTNRSGYQCFIRFNTNFKNNMCSRNSSWSKEEDQKLTDAVNALRTGNFIPWGEVAKVMGDRRKQQIYMRWNYSLAPNLKKGRFTEEEDRLLLQGVAKFGSNFTKISVALLPQRNTAQLNDHYRTLMNEKKNNWNCEDDMKLVKLFDKFGNNWSAIAKEFANKSRVQVRHRHTAIIRYLSRGLSIRTIPRWGPKIEVKDTQEDILNRGERMLDEMSEMMMIQQRNKEEARREQLSKIDQELRDYFKAIYRSPSKLGRHKKFYSIEEVDGKTQKLNIILNMLKADLDIPDDLEEEVFLTEKDKQLLTSLKAFSRTETSESEAQQKYLEHIRRKMFGSLIPSASADRFIPPLPFNGKVQRTKGKKLVGINYFPSGDKCLAEINHELNTPETIISLIGGWETELEFNNMEKIFISETEQSKEDLSTTNTTFDPNAPSTSGIVINESRNVGQEILSNTEQSSQIIRRNLSKYYPEVLIPPNYTTLLGFRGLLLSKHILEAEASEEDEYEEAEECVMTPEGEKALELFEERLVKLFKFPIELSEIAPPVLHVSQNRGFNDSDNDDDCGKKRKANKTNSGPAAKRKAKVEKIDVAENSEAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00939476;
90% Identity
iTF_00939476;
80% Identity
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