Mrus023600.1
Basic Information
- Insect
- Machimus rusticus
- Gene Symbol
- -
- Assembly
- GCA_951509405.1
- Location
- OX608052.1:1854627-1859327[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.008 1.5 10.6 1.9 1 23 72 94 72 94 0.93 2 16 0.02 3.8 9.4 2.9 1 23 100 123 100 123 0.92 3 16 1.3 2.5e+02 3.7 1.4 1 23 126 149 126 149 0.92 4 16 0.51 94 5.0 0.7 3 22 159 178 157 178 0.84 5 16 0.00073 0.14 13.9 1.1 1 23 186 208 186 208 0.98 6 16 0.00048 0.091 14.5 3.6 1 23 214 236 214 236 0.97 7 16 2.3e-05 0.0043 18.6 0.5 1 23 242 264 242 264 0.97 8 16 0.052 9.8 8.1 0.8 1 22 270 291 270 291 0.97 9 16 0.0032 0.6 11.9 0.6 1 23 591 614 591 614 0.97 10 16 0.0022 0.4 12.4 4.3 1 23 636 658 636 658 0.96 11 16 0.0012 0.22 13.3 0.3 3 23 695 716 693 716 0.93 12 16 0.00025 0.047 15.4 0.3 2 21 732 751 731 752 0.93 13 16 0.00043 0.081 14.6 5.1 1 23 760 782 760 782 0.98 14 16 6.5e-05 0.012 17.2 2.2 3 23 790 810 788 810 0.96 15 16 1.6e-05 0.0031 19.1 0.4 1 23 816 838 816 838 0.98 16 16 0.022 4.1 9.3 2.2 1 21 844 864 844 865 0.93
Sequence Information
- Coding Sequence
- ATGTCCGTGGGCGAGGAGAACTACGCGAATTGGTCCGACTCGGAGGAATCTGGCGAGGAGAGCCCCCCGAAGGGCACCAACTCCGATCGAAGATGCAAGTTCTGCGTTAAATTGGTCCCCAAAATTTCGGATGTCAAAGCGCACGAGAAGAAGTGCTCCGCTGCTCTGAAGAACACAGCGGACGTGGTCACCTGCAGGGACGGCACCAAGCGATTCCTCTGCGATATTTGCTtcagatttttcaaatatctcacCGGGCTGACTAAGCACAAGAGCTGGCATGTGCCTCCGGGGGGCTTCGTCTGTCGTCACTGCGAAGCGAGGTACTGCACGGCGCAGGAGCTCGAAAAGCACAAGGAGGAGTCCCACCAGGTCTACAAGTGCCAAATTTGCAAGAGCCTCCACGAAACCCTGGACAACTACTTGAAGCATATCAGAGCAGAGCACAACGGCCTGGACCGACTATGGGTGCACTGCGATGAGTGCaacatgaattttaaatcGCAGACGATTTTAGACTACCACAAGAGAACCAAGTGCGGCACCATTAAGCCCTTCAAGTGCGAGGAGTGCGGCTCCCACTACCAGACGCAGGCCACGCTCAACATTCACAGGCTCATTCACACGGGCGAGAAATCGTTTTGCTGCAGCTTCTGCGGAAAAAGTTTCTTGAGCAAAGGACAACTTACCATCCACGAAAGGAAACATACTGGCGAAAAACCCTACAAATGTGAGcTCTGTGACAAGGCGTTTTCTTACCGTGAAAGTTTGGTGACCCACTCATCCGTTCATACAGGGATCAAGCCATACGTATGTCAGGCTTGTGATGCTAGATTTTCATGCGTAGGAAATTTACAGAAACACAGACGCACTCGACCAAACAGCTGTGGCTTGCCGCAATATTgtgttaataaaaaagttgctCCCAGGGCGAGCAGTCGAGTGCCAGGAACACTAACAATGTCcaatgtaaaaattacaaaagcaaacaaagTAATAGGTGTGAAAAATAAGAGTGATAGTCTTGAACTTAAGAAAGATAAAACAACAAACACCGAGCAaactatttcaaataaacaagATTCGGAAGATAATTCCACTCAATATGAAACTTCAACAGAGAGTACCGAGAAGAATGATGTCGGAGAGACGACCATTGGTGTCAGCTCAATTCAGTTGCTGGATATCCAAATTCTTAAACAGACGGACGAAAAAGAAATTACCATTCGGGAAAACGAATCCAATTGCTTGATTGGGGAAGTGTAtcaaattgttgaaattgCAAATGAAACAGAACCGCAAATAAATGCAAATGTTACAGAGCCgcaaataaatgtaaatgaCATTTCTAAAATAGTTAACAAGAAAGCAGAGCCTCTTCTTAGCGAGGGAACCCAATACAATCAAGAAGATGATCCTCTTACATCGGAAATGGATGATGATATAAAATCCGGAAATTTCGAAGATGTTTATTTAGATGAAGGAAACTATGACCAAAATGATATGGACATGGATGACTATGGCGGAAACGATATGATGCTTGTTATTATGAAGGAAGACGATGATAAAAACGAAGATATTCCCTTATCCGTAATTAAATCTGGCGAAGGAATTATGCATAacgaaatgaatttattagcATCAGCAGAGAGTACAACAGAGGCAGATTTAGGGCAATGCACCAGTGATGATAGCGAAACAGATTGTTTTGCAACTGATTTAAATGCTACTGCGAAATCGAATTCGTTGAATATTggtaaaaaagatatttacgAATGTAGTGTTTGTCCCAAGATTTACCAAAATAGACGACCATTTCTCAAGCACCTTAAGAATGATCATAATATAGATCAGCCCGAACTTCAAGAAAAATCTCGGAAGAATCGCCAAAGAAAAGCCGGCGCACATGCCTGCCCCCACTGCAAACGAAACTATTCCgaagttaaaaaattggaGAAACACATTAAGCGGCATGGACCTGATGGGAAATTGACTGTTAAAAGCTCTTGTTGTAGTCGGTTTTTTGAAACTAAAGAACAAGCTGATAATCATGTTTTAGGTGTCCACAGTCAAATGGTTATATGTGCTTTATGCAGCGAAACGTTTTCTAGCcccgaaaaattaaaacagcaTAAACAATATTCTCATGcaacaaaaaaagaagaatgGGAGAAATGTATCAAGAAATTTAGCGTTTGTcaaaaatgtggaaaaaagTTTACAAGCAAAATTGCTTTGTCTGATCACGAGAGATCTGACTGCGGAAGATCTCCTTTGTATAAATGTGATGTATGTAACAAACACTTTCATAGTGCTGGTTCTCTTAAAACGCATAAAACTATGCATACTGGAGACTTACCCCATTTATGCAACTACTGCGGCAAGGCGTTTCGAACATTTGGCCAAGTAAAAGTACATGAAAGAAAGCATAATGGTGAAAAACCCTTCAAATGTACGGTGTGCTCTAAAGCGTTTGCTTATCGTGAAAGTTTGCTTACGCACATTTCCATTCATACTGGCGTAAAACGATTCATGTGCGAAGGTTGTGGACGCAGATTTTCCTGCATTTCCAATCTTCTTATGCATCGAAAACATAACCAAAGTACTTGCGGAATCGTTCCAAATAGTACTAAacctttttctgaaaatatagGTATTTCACGGGGGCAATTATATGTTGGTGAAAGACCAATgtaa
- Protein Sequence
- MSVGEENYANWSDSEESGEESPPKGTNSDRRCKFCVKLVPKISDVKAHEKKCSAALKNTADVVTCRDGTKRFLCDICFRFFKYLTGLTKHKSWHVPPGGFVCRHCEARYCTAQELEKHKEESHQVYKCQICKSLHETLDNYLKHIRAEHNGLDRLWVHCDECNMNFKSQTILDYHKRTKCGTIKPFKCEECGSHYQTQATLNIHRLIHTGEKSFCCSFCGKSFLSKGQLTIHERKHTGEKPYKCELCDKAFSYRESLVTHSSVHTGIKPYVCQACDARFSCVGNLQKHRRTRPNSCGLPQYCVNKKVAPRASSRVPGTLTMSNVKITKANKVIGVKNKSDSLELKKDKTTNTEQTISNKQDSEDNSTQYETSTESTEKNDVGETTIGVSSIQLLDIQILKQTDEKEITIRENESNCLIGEVYQIVEIANETEPQINANVTEPQINVNDISKIVNKKAEPLLSEGTQYNQEDDPLTSEMDDDIKSGNFEDVYLDEGNYDQNDMDMDDYGGNDMMLVIMKEDDDKNEDIPLSVIKSGEGIMHNEMNLLASAESTTEADLGQCTSDDSETDCFATDLNATAKSNSLNIGKKDIYECSVCPKIYQNRRPFLKHLKNDHNIDQPELQEKSRKNRQRKAGAHACPHCKRNYSEVKKLEKHIKRHGPDGKLTVKSSCCSRFFETKEQADNHVLGVHSQMVICALCSETFSSPEKLKQHKQYSHATKKEEWEKCIKKFSVCQKCGKKFTSKIALSDHERSDCGRSPLYKCDVCNKHFHSAGSLKTHKTMHTGDLPHLCNYCGKAFRTFGQVKVHERKHNGEKPFKCTVCSKAFAYRESLLTHISIHTGVKRFMCEGCGRRFSCISNLLMHRKHNQSTCGIVPNSTKPFSENIGISRGQLYVGERPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628607;
- 90% Identity
- iTF_00936769;
- 80% Identity
- -