Matr001248.1
Basic Information
- Insect
- Machimus atricapillus
- Gene Symbol
- -
- Assembly
- GCA_933228755.1
- Location
- CAKOFS010000009.1:120287-124544[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.015 2.7 9.6 1.3 1 23 72 94 72 94 0.93 2 17 0.017 3.2 9.4 2.9 1 23 100 123 100 123 0.92 3 17 1.1 2.1e+02 3.7 1.4 1 23 126 149 126 149 0.92 4 17 0.43 78 5.0 0.7 3 22 159 178 157 178 0.84 5 17 0.00043 0.078 14.4 1.1 1 23 186 208 186 208 0.98 6 17 0.00041 0.075 14.5 3.6 1 23 214 236 214 236 0.97 7 17 1e-05 0.0018 19.6 0.6 1 23 242 264 242 264 0.97 8 17 0.044 8.1 8.1 0.8 1 22 270 291 270 291 0.97 9 17 0.0048 0.88 11.1 0.8 1 23 580 603 580 603 0.97 10 17 0.00031 0.058 14.9 4.4 1 23 625 647 625 647 0.96 11 17 6.1 1.1e+03 1.4 0.1 6 23 660 678 660 678 0.91 12 17 0.00011 0.019 16.3 1.0 2 23 683 705 682 705 0.94 13 17 0.00021 0.039 15.4 0.3 2 21 720 739 719 740 0.93 14 17 0.00037 0.067 14.6 5.1 1 23 748 770 748 770 0.98 15 17 5.4e-05 0.01 17.2 2.2 3 23 778 798 776 798 0.96 16 17 1.2e-05 0.0021 19.3 0.5 1 23 804 826 804 826 0.98 17 17 0.018 3.4 9.3 2.2 1 21 832 852 832 853 0.93
Sequence Information
- Coding Sequence
- ATGTCAATGGGCGAGGAGAACTACGCGAATTGGTCCGACTCGGAGGAATCCGGCGAGGAGGGCCCCTCAAAGGGGACCAACTCCGACCGGAGGTGCAAATTCTGCGTGAAATTGGTCCGCAAAGTTTCGGATGTCAGAGCGCACGAAAAAAAGTGCTCCGTTGCTCTGAAGAACACAGCGGACGTTGTCACCTGCAGGGACGGCACCAAACGATTCCTCTGCGATGTTTGCTTCAGATTTTTCAAATATCTCACCGGGCTGATCAAGCATAAGAGCTGGCATGTCCCACCGGGGGGCTTCGTCTGCCGTCACTGCGAAGCGAGGTACTGCACGGCACAGGAACTCGAGAAGCACAAGGAGGAGTCCCACCAGGTATACAAGTGCCAAATTTGCAAGAGCCTCCACGAAACCCTGGACAACTACTTGAAGCACATCAGAGCAGAGCACAACGGGCTGGACCGAGTGTGGGTGCACTGCGACGAGTGCAACATGAATTTTAAATCCCAGACGATTTTGGACTACCACAAAAGAACCAAGTGCGGCACCATTAAGCCCTTcaagtgcgaggattgcggctcccactaccagacgcaggccacactcaacattcacaggctcattcacacgggggagaaatcgttttgctgcagcttctgcggaaagagttttctgagcaagggccaacttaccatccacgaaaggaagcacactggagaaaagccctacaaatgtgaGATATGTAACAAGGCGTTTTCTTACCGTGAAAGTCTGGTGACCCACTCATCTGTTCACACAGGGATCAAGCCATACGTATGTCAGGCTTGTGATGCACGATTTTCATGCGTAGGAAATTTACAGAAACACAGACGCACTCGACCAAACAGCTGTGGTTTGCCGCAATATTGTGTTAATAAAAAAATCGCACCCAGGGCGAGCAATCGAGTGCCAGGAACACTAACAATGTCGAACGTAAAAATAACAAAAGCAAACAAAGTAATAGGTATGAAAAATAAGAGCAGTCGTCTTGAATCCAAGGCAAATAAAACAACGGACACCGAGCAAACTATTTCAAAAAAACAGAATTCGGAAGATAATTCTACTCAATATGAAACTTCAACTGAAAGTATCGGAAAAAATGATGTGGGAGAGACGACAATTGGTGTCACTGCAATTCAGTTATTGGATATCCAAATTCTTAAGCAAGCCGACCAAAAAGAAATTGCAATTCGCGAAAGCAAACCAAATTGTTTAATTGGGGAAGTGTATCAAATTGTTGAAATTGCAAATGAAACAGAACCACCGCAAATAAATGCAAATGTTATTTCTAAAATAGTAAACAACAAAACAGAGCCTCTTCTTAGCGAGGGAACCCAATACAATCAAGAAGATGATCCTCTTACATCGGAAATGGATGAGGATATAAAATCGGGAAATTTCGAAGATGTTTATTTAGATGAAGGAAACTATGACCAGAATGATATGGACTTGGATAATTATGGCGAAAACGATATAATGCTTGTTATTATGAAGGATGAAGATGAAAAGAACGAAGATATTCCCTTATCCGTAATTAAATCCGACGAAGGAATTATGCACAACGAGATGAATTTATTAACATCAGGAGAGAGTAGAACAGAGCCAGAAGTGGGGCAATGCTCTAGTGATGAGAGCGAAGCAGAATGTATAGCAATTGATATTAATTCTACTGCGATATCGAATATCGGCAAAAAAGATGTTTACGAATGCAGTCTTTGTCCCAAGATTTACCAAAATAGACGACCATTTCTCAAGCACCTTAAAAATGATCATAATTTAGATCAACCCGAACTTCAAGAAAAATCCCGGAAGAATCGCCAAAGAAAATCCGGCGAACATGCCTGCCCCCACTGCAAACGAAACTATTCCGAAGTTAAACAGTTGGAGAAACACATGAAGCGTCATGGACCTGATGGAAAATTAACTATTAAAAGCTCATGTTGTAGTCGGTTTTTTGAAACTAAAGAAGAAGCTGAAAATCATGTTTTAGGTTTCCACAGCCAAATGGTTTCATGTGCTTTATGCAGCAAAACATTTTCTAATCCCGACAAATTAAAACAGCATAAGCAAAATACGCATTCAACGAAAAAAGAAGAATGTGAGAAATCAAAGAAATTTAGCGTCTGCCAAAAATGTGGGAAAAAGTTTACAAGCAAAATTGCTTTGTCTGATCACGAGAGATCTGATTGCGGAAGATCGCCTTTGTACAAATGTGATGTATGTAATAAACATTTTCATAGTGCTGGTTCTCTTAAAACGCATAAAACTATGCATACTGGTGATTTACCCCATTTATGCAACTATTGTGGGAAGGCGTTTCGAACATTTGGCCAAGTGAAAGTACATGAAAGAAAGCATAATGGTGAAAAGCCCTACAAATGTACGATGTGCTCTAAAGCCTTTGCCTATCGTGAAAGTTTGCTTACGCACATTTCCATTCATACTGGCGTAAAACGATTTATGTGCGAAGGTTGTGGGCGCAGATTTTCGTGCATTTCCAATCTTCTAATGCATCGAAAACATAACCAAAGTACTTGCGGAATTGTACCAAATAGTACTAAACCTTTTTCTGAAAATATGGGAATTTCACGGGGACAATTATACGTTGGTGAAAGACCAGTGTAA
- Protein Sequence
- MSMGEENYANWSDSEESGEEGPSKGTNSDRRCKFCVKLVRKVSDVRAHEKKCSVALKNTADVVTCRDGTKRFLCDVCFRFFKYLTGLIKHKSWHVPPGGFVCRHCEARYCTAQELEKHKEESHQVYKCQICKSLHETLDNYLKHIRAEHNGLDRVWVHCDECNMNFKSQTILDYHKRTKCGTIKPFKCEDCGSHYQTQATLNIHRLIHTGEKSFCCSFCGKSFLSKGQLTIHERKHTGEKPYKCEICNKAFSYRESLVTHSSVHTGIKPYVCQACDARFSCVGNLQKHRRTRPNSCGLPQYCVNKKIAPRASNRVPGTLTMSNVKITKANKVIGMKNKSSRLESKANKTTDTEQTISKKQNSEDNSTQYETSTESIGKNDVGETTIGVTAIQLLDIQILKQADQKEIAIRESKPNCLIGEVYQIVEIANETEPPQINANVISKIVNNKTEPLLSEGTQYNQEDDPLTSEMDEDIKSGNFEDVYLDEGNYDQNDMDLDNYGENDIMLVIMKDEDEKNEDIPLSVIKSDEGIMHNEMNLLTSGESRTEPEVGQCSSDESEAECIAIDINSTAISNIGKKDVYECSLCPKIYQNRRPFLKHLKNDHNLDQPELQEKSRKNRQRKSGEHACPHCKRNYSEVKQLEKHMKRHGPDGKLTIKSSCCSRFFETKEEAENHVLGFHSQMVSCALCSKTFSNPDKLKQHKQNTHSTKKEECEKSKKFSVCQKCGKKFTSKIALSDHERSDCGRSPLYKCDVCNKHFHSAGSLKTHKTMHTGDLPHLCNYCGKAFRTFGQVKVHERKHNGEKPYKCTMCSKAFAYRESLLTHISIHTGVKRFMCEGCGRRFSCISNLLMHRKHNQSTCGIVPNSTKPFSENMGISRGQLYVGERPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628607;
- 90% Identity
- iTF_00718012; iTF_00937520;
- 80% Identity
- -