Matr000166.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Machimus atricapillus
Gene Symbol
-
Assembly
GCA_933228755.1
Location
CAKOFS010000001.1:1231303-1234345[+]

Transcription Factor Domain

TF Family
zf-LITAF-like
Domain
zf-LITAF-like domain
PFAM
PF10601
TF Group
Zinc-Coordinating Group
Description
Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 3.4 1.2e+04 -2.5 0.1 58 66 6 14 2 16 0.61
2 3 0.02 73 4.6 0.1 4 23 402 421 399 425 0.79
3 3 6.2e-15 2.2e-11 44.7 3.5 5 70 609 674 605 674 0.95

Sequence Information

Coding Sequence
ATGTCTCGAAGTTTCAAATGCAAGCTGTGCGGCAAGACATTGAATGTTGATAGCAATAATGATGCTTCAGATCTACTAGAGCACCTTATAGCTTCGCATCCTGAAATAAAAATTCCAGATTCCATTATTAATGAAACCGTAGAAGACATAGAGGAGGCAAAACGAAAAAACCTGCTGCATATCCCGAAAAATAAACTTGATCAAATTAAAAAACAACTTTCAGGAGACAACGATAAGTCTAAAGAACAACCAATAGAAAATATTCCTCAAACCGCTAAAGATAAAAAATTGCCATCCTCGGATAAAACTTCTGAATCGAAGTCACAAAAAACCTCGGATTCGGCGATAAAACTACTTTCTAAAACCAATAAAACTAATAGTGACAAAGTACCTAAGGATACGAAGATGAACAATAAAAATAGCTCACAAAATGCTTCGATTGCTGGCTCTAAGTCACGAATTCCCCCAGATAAGGTATCTTTTAAGGAGTCTAAAACTTCTGTTGACAAAGATCATAAACCAATAATTTCTAAGTCGTCCTCGAAATCAGACAATAAAAGTCAAGCAAATGCTTCCCTTAACTCTGACACTAAACTTCTAGGACCAAATCCACAAGGATCTAAGAATTCTGTCTCAAAAATGCATATCATACCTGAAGAAGAAATCTATCACACACCACCTTCTTCCCTAGACTGGCCTTCTAATGCAGAAAATTCCAAAGCTTCCTTGAAGAATAGTCCCAAGGATAAAAATTACAAGCCACACACTTCTAAATCCAAATCGCAAACTTCTCAACAATCAAGTGATTCTAAGAAATTTGGTAGCAAAATGTCATGCTTTAAGCCCAAAAATCGTAAAAATTCTGATGATTCGTTCTTCAGTACCCAGACAAACAATAACAACCGGAAACCAATTGATCTCACAGAAGTGTCCACTAGAAAATATTACAAGCCACACCCCTCTAAATCCAAATCACAAACTTCTCAAAAATCAAACGATTCTAAGAAATTTCTTAACAAAATGCCATGCTACAAATCCAAGAATCGTAACAATTCTGATGTTATGACCTCCAGTACCCAGACAGAGAATAACAGATTTGCAGATTCAATGGCTTCCGGTGATGAAACATCCAGCGTTCCTAAATCAACAAAATGTTGCAATAAAAAATATCGTTATACTATTGAAAAATGGAAACCTGGAAATAAACGAATTTTTTGTCCGAAATGCGGCATGAGACGACGACCAATTATTCGAATACGATCAGACAAATGTGAAGAGAAGAAAATTCTTAATGAAACTCAACCAGCAACACTAAAGTTAAATGATTATGAAAATATAAAAGATGAGAACTATAAAATTTTGGAGGGCGGAGATTGGGATAAACCTCAGAAAAATTTGGTGTCGAACAAAGATCGACAAGAAGTCAATGTACCGGAAATAAAAGTAAAAAACTTCAAAAATGGACAGCCTGAGATTGATTGTCGCAATAGTGATATAAAAATTCAAAACCAAACGACTCAATTCACCAATGATCAAGGTGAAGGGGATCAGTTATTAAGGGACTCGACAAAGTTTGTTGGATGGCAATATAAACAAGCTCGGGAAAGTATTGACCAAACACAACAAATTGATGGATTACATTTTAATCGATCTTCAGAACCAGAATTAAATATTCCGTTAAAAATTAGTGTTATGAATAATGGGGCAAATCCTCGTGTGTATAAGCGTAGGTATAAAATAAAGGCTTTTCCTCTGCCAGTTAGAAGTAGTAGTACTGTGACGTTATATAAAAACAGCTTGAAAAAATGGAAACCAGGAAGAGGAGCAATTTTCTGCCCAAAATGCGGAGCAAATAAACATCCTACAATTAAAGCCAATTCCGATAAAATTTCGAATTCGCCGCTTGGAGCAGCTTGCATACTCACGTGTTGGCCACTTTGCTTCTTGCCGTGCCTCTTCCCACCATCAGCAACAGAATATTTATATTGTTCTGTATGTAATAATTTATTGGGCAGTTACGATAGAAAAACCGAAGCTATACATCCAGTCACTGAAAATTCTGAAAAGAGACCGTCCATCCAAAATACCAAAGAAATTAATTCAGCTAGAGAAACTTCAGACCATACCCCAGCATCAGCAAAGCAGCAAAAAACAACAAAATAA
Protein Sequence
MSRSFKCKLCGKTLNVDSNNDASDLLEHLIASHPEIKIPDSIINETVEDIEEAKRKNLLHIPKNKLDQIKKQLSGDNDKSKEQPIENIPQTAKDKKLPSSDKTSESKSQKTSDSAIKLLSKTNKTNSDKVPKDTKMNNKNSSQNASIAGSKSRIPPDKVSFKESKTSVDKDHKPIISKSSSKSDNKSQANASLNSDTKLLGPNPQGSKNSVSKMHIIPEEEIYHTPPSSLDWPSNAENSKASLKNSPKDKNYKPHTSKSKSQTSQQSSDSKKFGSKMSCFKPKNRKNSDDSFFSTQTNNNNRKPIDLTEVSTRKYYKPHPSKSKSQTSQKSNDSKKFLNKMPCYKSKNRNNSDVMTSSTQTENNRFADSMASGDETSSVPKSTKCCNKKYRYTIEKWKPGNKRIFCPKCGMRRRPIIRIRSDKCEEKKILNETQPATLKLNDYENIKDENYKILEGGDWDKPQKNLVSNKDRQEVNVPEIKVKNFKNGQPEIDCRNSDIKIQNQTTQFTNDQGEGDQLLRDSTKFVGWQYKQARESIDQTQQIDGLHFNRSSEPELNIPLKISVMNNGANPRVYKRRYKIKAFPLPVRSSSTVTLYKNSLKKWKPGRGAIFCPKCGANKHPTIKANSDKISNSPLGAACILTCWPLCFLPCLFPPSATEYLYCSVCNNLLGSYDRKTEAIHPVTENSEKRPSIQNTKEINSARETSDHTPASAKQQKTTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-