Matr014362.1
Basic Information
- Insect
- Machimus atricapillus
- Gene Symbol
- -
- Assembly
- GCA_933228755.1
- Location
- CAKOFS010000074.1:549999-551919[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.16 2e+03 0.0 0.1 23 46 209 232 192 238 0.78 2 5 8.6e-05 1 10.5 0.3 22 44 264 286 259 294 0.87 3 5 0.061 7.4e+02 1.4 0.0 21 44 291 314 288 318 0.86 4 5 1.4e-05 0.18 13.0 0.0 21 44 319 342 307 352 0.83 5 5 0.3 3.6e+03 -0.8 0.0 22 44 348 370 342 378 0.78
Sequence Information
- Coding Sequence
- ATGTCGGAAAGTTATAGCTCCGAAGTTAAAATAGAATCGGTCTGTCGAACCTGCATGGAGGAGGCCGAGGATCTTCGATCAATTTTCAACGAGGGGAAGGTCTGTGGCGAAGTCACAACTCTGTCGGAAATGTTGGCTAAATGCACATCACTTGACCCAAGGCAGGGCGACGAACTGCCATCAGTTGTCTGTGCAAAATGCATGATGCAAATCTGTAGGTCTTATGTATTTCGGAAAAAATGTTTAAATTCCGATGCGACCCTTAGAAAGAACTTGCAAACGAAATTCAGCGAGGACGAAGTTTATGGGACGCTATATTTTTATGACGACAATGCAGAGCAGCAAAACACTGTGGAAGAACAAACAGAAGAAGTGAATAATTATGAAGAGGAAGTAAATATAGTAATTAAGAGTGATGATTCGGTAGAAGTAATTGAAAACGTACAAAGCGAGGAAGTAAATGAATTTGAAAATGTTATGGAAGAAGAAAGTAACGCTGAAAAAAGTGTTGAATATGAAACAAGCAATGTGACCTCTGAGGAAAAATCAGACATTGACGTCATGACGAATCCTCCGAAAGTTGTGTTTCGAAAACGGAGGCAGAGAACTAAAAAACTTCCAGGACCCCCATTTAAATGTGAGGTATGCGAAAAGGTTTTAAGTAATCATAGCTCCTATAAATATCACATGCAACTGCATTCGGACAACACGCCGTATTTATGCAGCGAATGCGGAGAAGGTTTTAAGACCCGGAATGCGTATGATGGTcatatgacgacgcataataaaaacaatcctcatacttgtaaaatatgcgggaaggcatatcgacaagccggatcgttgcgttgccacatgctttcacacacgggagaaaaacctttcctttgcggaatatgcggaaaaggaatgacacaaaAATCTGGATTTAAGAAAcacatgttgacgcatacaggagaaaagccgcacacctgcgatatttgctttaaaaaatttcgctattcgagcaatttaataattcataagcgggcgcacactggagataagccttacgtttgcacggtttgtgacaaacgtttcgtaggtggcgaacaactcaaaagacacgcaatagttcataccaaggagaaaccctttgaatgtgacgactgtgggaagtttttcaaccgTAGAAGTTCATTACTTGTTCATAAATATCTACATACTGGGAATAAGAAGCATTCATGTCAGATATGCGGAAAATCATATATTCAATTTCATTGCCTTCACAACCACATGCTGACTCATAAAAGCGAAGAGAATGAGGTCTTGAACCAGCAAGAAATTGAAAGTATGCAGGAATGA
- Protein Sequence
- MSESYSSEVKIESVCRTCMEEAEDLRSIFNEGKVCGEVTTLSEMLAKCTSLDPRQGDELPSVVCAKCMMQICRSYVFRKKCLNSDATLRKNLQTKFSEDEVYGTLYFYDDNAEQQNTVEEQTEEVNNYEEEVNIVIKSDDSVEVIENVQSEEVNEFENVMEEESNAEKSVEYETSNVTSEEKSDIDVMTNPPKVVFRKRRQRTKKLPGPPFKCEVCEKVLSNHSSYKYHMQLHSDNTPYLCSECGEGFKTRNAYDGHMTTHNKNNPHTCKICGKAYRQAGSLRCHMLSHTGEKPFLCGICGKGMTQKSGFKKHMLTHTGEKPHTCDICFKKFRYSSNLIIHKRAHTGDKPYVCTVCDKRFVGGEQLKRHAIVHTKEKPFECDDCGKFFNRRSSLLVHKYLHTGNKKHSCQICGKSYIQFHCLHNHMLTHKSEENEVLNQQEIESMQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01184037;
- 90% Identity
- iTF_00718007;
- 80% Identity
- iTF_00936782;