Matr032012.1
Basic Information
- Insect
- Machimus atricapillus
- Gene Symbol
- Aef1
- Assembly
- GCA_933228755.1
- Location
- CAKOFS010000326.1:205727-206137[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.006 73 4.6 0.2 22 49 9 36 5 39 0.85 2 4 5e-06 0.061 14.4 0.1 21 51 36 66 34 67 0.88 3 4 0.001 12 7.1 0.0 21 51 64 94 62 95 0.87 4 4 4.9e-05 0.6 11.3 0.1 21 47 92 118 90 123 0.89
Sequence Information
- Coding Sequence
- ATGACTGTAGCCAACGGCCccgtagacaaaccttttcaatgcaacgtgtgcgaaaggcgatttcggcagctgagcacattgacgaaccatgtgaaaatccacactggcgaaaaaccctataaatgtacaatatgcgagaagcacttccggcaatccagcaccctaacgaatcatctcaaaatacatactggtgaaaaacccttcaactgcaccttctgtggcaagcagtttcgtcagttgagcacactcacgaatcatcttaagatccacacgggggaaaagccattcgagtgtgccgtatgcaagaaacaatttcggcaatcgagcacactgaacaatcacataaaaatccacgttatggataaactctacATACCTTTTGAAATAAAGGCTGAGGAAGAAGAGGGCTGA
- Protein Sequence
- MTVANGPVDKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCTICEKHFRQSSTLTNHLKIHTGEKPFNCTFCGKQFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKLYIPFEIKAEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203877;
- 90% Identity
- iTF_01540912;
- 80% Identity
- iTF_00936809;