Matr013445.1
Basic Information
- Insect
- Machimus atricapillus
- Gene Symbol
- topi
- Assembly
- GCA_933228755.1
- Location
- CAKOFS010000063.1:183262-186651[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.22 41 5.9 0.5 2 20 164 181 163 183 0.80 2 11 1.6e-05 0.0029 18.9 2.4 1 23 243 265 243 265 0.97 3 11 7.7 1.4e+03 1.0 0.1 2 21 288 307 287 310 0.68 4 11 0.036 6.5 8.4 0.1 2 23 366 387 365 387 0.92 5 11 1.8 3.3e+02 3.0 0.0 1 20 393 412 393 414 0.88 6 11 0.073 13 7.4 1.3 2 22 434 454 433 457 0.89 7 11 5.7e-07 0.0001 23.5 1.9 1 23 509 531 509 531 0.95 8 11 0.00062 0.11 13.9 1.0 1 23 537 562 537 562 0.95 9 11 0.28 51 5.6 1.7 1 23 568 590 568 590 0.88 10 11 3.4e-07 6.2e-05 24.2 0.3 3 23 598 618 596 618 0.98 11 11 0.0014 0.25 12.8 1.1 3 23 626 647 624 647 0.95
Sequence Information
- Coding Sequence
- ATGGCTTATAACGAAGAAGAATATAATTCAGATATTCTGCTCGCGGAAAAAATATTTTCCCAACTAAAAGAATATAGTCCAGAGAAGCGCAATGAAGATGAACAACCGCATTATACTGAAAATAATGAGATTTCAAATAACATACCCACTGACGAGAATGTTCCTTTTTCAGTGCTGAACTCTGGTTTTGAGGATCAATGCGATATTTGTAACCAGCAGTCGTTAAATCAGCAGGAGGATCCTAGCCAACCTGCTTTAGACCAGTCCGAAATGCAGACCCAACTCTGCTCCGAAGAACTGATCGACCTAACTGGTGAGTACGGGGGGCAGGTCGAGATGGCTGAAATATCCGAGTTGAGGGACGCAAAAGATTCTGTCCTTCTTATCGATGAGGCGCAAAGCCAGCAATACTTGGATGTACTTTTTGCTTCACTGCCTACGGCATATTCAGCAAACAATGTAATCATTAAGGACGAAAAATGTGCCATAAAATGCACTAACTGTGAACGCGTTTTCAATGATGAGGCATTCAACGAGCATATTTGCGACTACGATGAGAACAAGAATCTCATAAATGATGAAGAGCCGATAAAAAGCTCCACAATTGAATTGGAGGAACCCCCGTGCCTTCGCCAACTCCGAGAAAATAACATGCGAATTAGAAAATTTCTAAAGGACGAACTTAAGATAGACATCGGAGGTCCTACTAAAAGAAGTGATGGTCCGCATGAGTGTACCATGTGCGAAAGAAAATTCGTACATGCCTCTGGATTGGTCAGACACATGGAAAAGCATGCAATGGACCTGATTCCTGTCACGATCAACACCACAAAGACTGGAAGTACACTGAGGGTGGTCGTAAAGTGCCTGATTTGTGGAAGGATAATTTTTGGGCATGCCGAAGCCATGGAACACTTGAATGAAAACCACGCACACTTGATAAACGACAATGAGACCGACAGTGAAAAGGATTTCCCAACTGAAAAAATTGATGAAGCGGTTGAGTTTATTACAAAAGAAAAAGAGAAAACCGATGAGCAAATAGACAAAAAAACGAACCCATACTTAAGAGTTCTGATCTTGACGTGCGCTTTGCAGTGTGAATTTTGTGATTTATTATTCTCAGAAGTCTCAGATTTACTGAAACATGCTGCGGCCCACGATCCCATACGGGGATTTGAATGCACCTCTTGTGGGATAAACGTTCCAACAGCTAAAGAAATATTCCTCCACTGGCAAGCAGAATGTCCCTACGCCAGAGATGAAATAAAAAAGACAAACAATATGCCGAAATATCTCGTCTGTAATGTTTGTGAGAATAAGTACACTTCGCATGAGCAATTGTACGATCACAGATACACAGAATTTCATTTATTCCCAAGGCTGAACAGGAGTTCAGGAAACATGCAAATTTGTTGTGAGTACTGTGGCACTTTTCACAATAGCGCTCAAACAATTATGCGACACCACGAGGAGAAACATTTGAAAAAATCTAAAAAGGAGCCGACCACAAAATATAGGCAGTATCTCTGCGATGTTTGTGGGAAATCGTATACTCAATCAAGTCATTTGTGGCAGCATCTGCGTTTTCATAGAGGAGTTAAGCCATTTGCCTGCAAGGAGCCAGGCTGTAATCGGCGTTTTACAATCCGGCCAGATCTTAATGATCACATCCGAAAATGtcacacaggagaacgaccttatcattgccttgtatgcggtaaacgtttccttacaggttctgttttctaccaacatcgactgattcatcgtggtgagaggcggtacggttgtgatgaatgcggaaaacgattctatcgcgcagatgctctgaaaaaccatcaacgaattcatactggtgaaaaaccctatgggtgcatgtattgcacgaaaagtttTAGACAACGTGGTGATCGCGACAAGCACATTCGCGCTAGACATGCTAATTTAGATGCAAACGCCAAATCGTTTATGAAAAATAAGGACGGTCCGAATAATGGTGGTGTAGTATTTGTTGGAAACGTCGCGTTCCCGAGTGGTATGTTTAAGCCGATCATGAGAGATATTGACGGAAGCCCAACTAACTAA
- Protein Sequence
- MAYNEEEYNSDILLAEKIFSQLKEYSPEKRNEDEQPHYTENNEISNNIPTDENVPFSVLNSGFEDQCDICNQQSLNQQEDPSQPALDQSEMQTQLCSEELIDLTGEYGGQVEMAEISELRDAKDSVLLIDEAQSQQYLDVLFASLPTAYSANNVIIKDEKCAIKCTNCERVFNDEAFNEHICDYDENKNLINDEEPIKSSTIELEEPPCLRQLRENNMRIRKFLKDELKIDIGGPTKRSDGPHECTMCERKFVHASGLVRHMEKHAMDLIPVTINTTKTGSTLRVVVKCLICGRIIFGHAEAMEHLNENHAHLINDNETDSEKDFPTEKIDEAVEFITKEKEKTDEQIDKKTNPYLRVLILTCALQCEFCDLLFSEVSDLLKHAAAHDPIRGFECTSCGINVPTAKEIFLHWQAECPYARDEIKKTNNMPKYLVCNVCENKYTSHEQLYDHRYTEFHLFPRLNRSSGNMQICCEYCGTFHNSAQTIMRHHEEKHLKKSKKEPTTKYRQYLCDVCGKSYTQSSHLWQHLRFHRGVKPFACKEPGCNRRFTIRPDLNDHIRKCHTGERPYHCLVCGKRFLTGSVFYQHRLIHRGERRYGCDECGKRFYRADALKNHQRIHTGEKPYGCMYCTKSFRQRGDRDKHIRARHANLDANAKSFMKNKDGPNNGGVVFVGNVAFPSGMFKPIMRDIDGSPTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00718060;
- 90% Identity
- -
- 80% Identity
- -