Matr026994.1
Basic Information
- Insect
- Machimus atricapillus
- Gene Symbol
- -
- Assembly
- GCA_933228755.1
- Location
- CAKOFS010000195.1:180089-186247[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.17 31 6.3 0.5 2 23 185 207 184 207 0.94 2 19 0.0081 1.5 10.4 2.9 2 19 250 267 249 270 0.92 3 19 0.076 14 7.4 2.9 3 23 282 302 280 302 0.90 4 19 0.00012 0.023 16.1 0.2 3 23 311 332 310 332 0.95 5 19 0.00065 0.12 13.9 2.1 1 23 338 360 338 360 0.96 6 19 0.0053 0.97 11.0 1.0 1 23 366 389 366 389 0.97 7 19 0.0011 0.2 13.1 4.0 1 23 394 416 394 416 0.98 8 19 0.22 41 5.9 1.2 2 23 426 447 425 447 0.94 9 19 0.0025 0.46 12.0 0.7 1 23 464 486 464 486 0.96 10 19 0.13 25 6.6 4.1 1 23 491 513 491 513 0.98 11 19 0.049 8.9 8.0 2.6 1 23 529 554 529 554 0.95 12 19 1.1e-06 0.0002 22.6 0.6 2 23 561 583 560 583 0.93 13 19 0.00026 0.048 15.1 0.4 1 23 588 611 588 611 0.97 14 19 0.00031 0.058 14.9 0.6 1 23 616 639 616 639 0.93 15 19 5.6e-06 0.001 20.4 2.0 1 23 642 665 642 665 0.98 16 19 0.62 1.1e+02 4.5 3.9 1 23 671 694 671 694 0.89 17 19 0.029 5.4 8.6 0.3 1 23 700 722 700 722 0.97 18 19 8.4e-07 0.00015 23.0 0.9 1 23 728 750 728 750 0.99 19 19 0.012 2.2 9.9 0.1 1 23 756 781 756 781 0.97
Sequence Information
- Coding Sequence
- ATGCCACCACGGAAAAACCGTGGACCTGGACGACCTCCAAAGCCAAAATCGACAAAATGCCTTAGTTGCGCCGTCGACATGACGGAGCCCTATCAACTCATTTTCGATGCAAGTGGTGTTGAACTAGAGCTGCCGAAATTGCTTTCCACTTGCTTTGGGATGCGCGTTGTGAAGGATAAAACGCAAATTCAGGCTCTCTGTGAGGATTGCCTTAATCAACTAATTGATGTTTTCGATGTTATGCAGAAGAAGACCGAGGAAGAGCCTGGACCGTCTACGAAGTCTCCAGAGCATTCAACAATACAAGACGAATTTGAAAATTTTGACCTCGAAAATGAAGACATTTACGAGGTCATTGAAGAGCCGGCTGAATTTGAGGAAGAAACCCAAGCAGAAACTAACAAACATAGTGAGGATTTTAATGAAAGTGATCTTCGAGAATTCGAAAATATTGATTACTTAGAAGATTTCGACGAAGAGGTCGACATTAGGGAATATAAAATCGGAATCCTTCAAAATACTCTTTCATGTTTATTACTTCCTGAAAGTATTCAGTGTCGGTTGTGTTCTGAAAGTTTTGAAAAACATGCTGATGTACTATCTCACACCGAAAGCGCACATTGTGTCGAGGAATTTGCCTACCCTTGTGTAATTGACGAAAATTGTGAAACACAAAAATCTATAATTGACCTTTCGTTGCACTTGGTTTTCAAGCATTACGATTTAGAAAAATTATCGATCTACACTCAATGTCCTGAATGCGATAAAAGATTCAAAAACTTTTTGCTTTACAATAAACATTCATGCTATGTCGGTGAAAAGGTTTCGCGAAGTGCAACTGATTGCGAAAGTTGTGGTAAATCGTTCAGATCGAATAAAAGATATCGCTTCCACCAAAATTTTCATCAAGAAAACAGACGTCCAAAAGCTTGTTTTATCTGCGATAAATCGTTTAGAGATGAAGATGAATTTTACGAGCATATTATGTATCAGCATGTGAAAAACATTGGGTTCGTTTGTTTAAGTTGCGACTTGAAGTTCACTAATGAGAAAAATTTAAAACATCATGAAAGTATACATAAAATTGAGCGACAGTATAGTTGTAAGCTGTGTAGCAAATCTTACCTCTATAATCAGCTTTTAAAGGATCATATGGAATCAGTTCATGGAAATAATCTTTACAAATGCCACATTTGTGATAAACACTTGATTAAGAAATCAATTCTAAACAAACACATTTTATCGCACTCTGTGCCTCAACCAACTGAAGTTATGACTTGCAGTTGTTGCGGGCTAATTTTTGAAAAATCTGAGGAAACTGAGGATCACATGAATAAACACAATGAAAGCGATGAAGCAAGCGTTATAATGGAAGAAATTGAGATTGCATATTGCTGTGAATATTGCGAGCTCGCTTTTAATTCTATCGAAAATATGAACGCCCACCGAGAGCTTCACGACAAAAAGACATATTACTGTGACTTATGTCCTCTAAGCTACTGCGAATATAAAAAAATGAAAACGCATAAACTGACTCATTTAAATTATGTGGACAAAAGATTAACTTACCCGGTTATTAGACACTATGTTTGCGATTTTCCGAACTGCACGATGAGTTACATGCAGTGGACTAGTCTTCGATCACATAAGAAGCACAAACATTGTTACCAGAAGAGTATTCAATGCCCCAAATGTCCTAAAACATTCACGGATTCGCAACAATATAAAAAACACATGGAAGATATCCACAAAAGCACTGCTTTTAAATGCCAATTTTGCAACAAAGTCTATGGCAACAACATGGCTTTAGCGGTTCATATTTCCAGGCGACATAACGCAAGTCGTTTCCAGTGCGATTTGTGTGAGCAAAGCTATTCGACGAAGGATGCGTTGGACAAGCATAAGACAAATGCTCACAGCAGCTTTACATGCAATATTTGCGGAAAAGTATTAAAAAATTTGAAGAATTTCCAAGTGCATCATCGAATGGTTCACGATAAGGAGAAAAGGTACTTCTGCAAGTATTGCAACAAGGGCTATTTCAATAACTGCGATAAAATGGAACACGAATCATCGGTGCATGAAAAAATTAAAAAATACTTTTGTGACTTATGTTCGTATTCAGCGGTGTATAAAGAATCTCTAGTTGTTCACAAAAGAGCGCACCAAAATGAAACGCCTTATGTATGCGAGGTCTGCAACAAAGGCTTCCGGCGAAATTATGCCATGCGTATTCATATGAAGCGACATTACAACACCAAGGATTTTACTTGTCCCTACGAGGACTGTGAGGCCTCCTATACGAATCTGGGAATTTTAAATAACCACATTAAAATGAAGCATGGCGATGGTGCGAATAAGGAACCAAAAATGAAGCGGAGGCGATTAGCTGGGGATGGTATTCTCTATCCGCGGTGTGAAGTATCTGCGGAATTTTTTGTTGACGACGACGACGGTTTAGACGATGGCGTTATTGGGGAACCGAGTCAAGCGTTACAGGCAGATGAAGATGACATAATACTTGATGATAATATTGACTATATTGAAAAGGATGATGAGTCTGGTTCAGGAGTTCCTGTACAGAGAATTGAATCAGATCACAATTATATTGTGGAAGAGGTATTCGCAGTTGTAATGCAAAATATATAA
- Protein Sequence
- MPPRKNRGPGRPPKPKSTKCLSCAVDMTEPYQLIFDASGVELELPKLLSTCFGMRVVKDKTQIQALCEDCLNQLIDVFDVMQKKTEEEPGPSTKSPEHSTIQDEFENFDLENEDIYEVIEEPAEFEEETQAETNKHSEDFNESDLREFENIDYLEDFDEEVDIREYKIGILQNTLSCLLLPESIQCRLCSESFEKHADVLSHTESAHCVEEFAYPCVIDENCETQKSIIDLSLHLVFKHYDLEKLSIYTQCPECDKRFKNFLLYNKHSCYVGEKVSRSATDCESCGKSFRSNKRYRFHQNFHQENRRPKACFICDKSFRDEDEFYEHIMYQHVKNIGFVCLSCDLKFTNEKNLKHHESIHKIERQYSCKLCSKSYLYNQLLKDHMESVHGNNLYKCHICDKHLIKKSILNKHILSHSVPQPTEVMTCSCCGLIFEKSEETEDHMNKHNESDEASVIMEEIEIAYCCEYCELAFNSIENMNAHRELHDKKTYYCDLCPLSYCEYKKMKTHKLTHLNYVDKRLTYPVIRHYVCDFPNCTMSYMQWTSLRSHKKHKHCYQKSIQCPKCPKTFTDSQQYKKHMEDIHKSTAFKCQFCNKVYGNNMALAVHISRRHNASRFQCDLCEQSYSTKDALDKHKTNAHSSFTCNICGKVLKNLKNFQVHHRMVHDKEKRYFCKYCNKGYFNNCDKMEHESSVHEKIKKYFCDLCSYSAVYKESLVVHKRAHQNETPYVCEVCNKGFRRNYAMRIHMKRHYNTKDFTCPYEDCEASYTNLGILNNHIKMKHGDGANKEPKMKRRRLAGDGILYPRCEVSAEFFVDDDDGLDDGVIGEPSQALQADEDDIILDDNIDYIEKDDESGSGVPVQRIESDHNYIVEEVFAVVMQNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00937497;
- 90% Identity
- -
- 80% Identity
- -