Matr009758.1
Basic Information
- Insect
- Machimus atricapillus
- Gene Symbol
- Hr39_1
- Assembly
- GCA_933228755.1
- Location
- CAKOFS010000043.1:1406384-1410900[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5 2.7e+04 -4.9 3.4 61 104 229 254 195 293 0.45 2 3 5.9e-12 1.1e-07 32.7 0.0 1 60 409 468 409 480 0.75 3 3 2.1e-79 3.7e-75 254.9 0.1 154 408 468 733 455 733 0.91
Sequence Information
- Coding Sequence
- ATGTCCGCTCCTCTTGGGGATGTGTCCCCAAATGTAGCTAGTCCGAATAGCTCAATGCTTAGCACCAGTGGCACCACCGGAAACTTGGCCTCAGTGCGCGGCAATATCTCAGTCACAAGCATAAAATGCGAGGAGAACGGGAGACCGCCCTCCGCCCCAGCGGCGACAACCACAAATTCAACCCTTAATGGAATACCGAACAGTAATAATTTTTTCAATGGTGGCGTTCGGATCTCTGTCCCGAAAGTCGAAGACTCCGAGGAATCGGAATCGGAACTGTCGATAATCGAAAGTTCGAAGGTCAACAGAAGACCGAATCCGAATAGTAAGAATGGACCTCGTCCAATGTCCTGGGAGGGTGAATTGTCCGAAGCGGAGGACATTATGGACACTGAGAATTCTGTGAGCAATGATAAACAGTTCGATGACTCTCACATGTCTATCAAGGACGAATCAAGGTCATCAGCGACCATAAAGCCCGAATATGATCACATTTCTGTGGATACGGGAGCGGGTGTGATATTCACGTCAGGATCAAAAAAATTTCAGAGTGATATAGTTAACCTCAAGTATGAGCCAGGACTTACAGATCCAGCGACGAGCGGTCTGAACTCCCCCCTACTTGCTAGATCTAAGACAAATCTCCTTCCGGCCAATCCCAGTCCAGATTCAGCTATTCATTCCGTTTATACGCACAGTTCGCCCAGCCAATCGCCGCTAACATCACGACACGCCCCCTACACCCCATCGCTGAGCAGAAATAATAGCGACGCCTCCCACAGCAGCTGCTACTCGTACAGTTCCGAGTTTAGCCCCACCCACTCACCGATTCAGGGTCGGCACAATGTTTATGGCAATTTTAATGGGTCCTTGCACCATCCAGTTTTGTATCGGCCAGTCCTGGATAGTGAGACGCAATCCCTTCCAACGACCCCTCGGAGGCCGGATGAGGTCATAATCGAGAACGATGCAATCCCATCAGCTGGAATTTCGAGACAGCAGCTCATTAACAGCCCgtgtcccatttgcggggacaaaatatcgggctttcactacggcattttctcctgtgagtcctgcaaggggttcttcaaaaggactgttcaaaacaggaaaaactacgtctgcgtccgaggaggaccttgtcctgtaacaatctccacccggaaaaaatgtccagcatgccgattcgataaatgtctgcagaagggcatgaaactcgaagCTATCCGAGAGGATCGGACTCGTGGGGGCCGGTCTACTTACCAATGCTCGTACACCCTCCCCAATTCAATGCTCAGCCCTCTAATGAGCCCCGACGCGAGCTGTTCCCAGGCGAATCAGCGAGTCGGGATCAACGGATGTATGGTCAAGTCTGAGCAACCGGACACAAGCAATGGGAACAGCAACAGCAGCACTGGGGTCAGTGGACACCGGAGCACCATCCCACCACTACTTCAGGAAATCATGGACGTGGAACACCTCTGGCAGTATAACGAAGGTGAACTATCCAGACTTAATCAACCGCCTACTGCTGGCGCAGATTCTGGAAATTTATCAGCAAATCCCCTCCTGGCGAGCACTGGACTATCGACGAATGGAGAGAACACCAATCCTGACCTAATCGCAAATCTTTGCACTGTCGCTGATCACCGGTTGTACAAGATCGTTAAGTGGTGCAAGAGTTTACCACTATTCAAACATATTTCGATCGACGATCAAATATGTTTGCTTATCAACTCATGGTGTGAATTGCTCCTCTTTTCGTGTTGCTTCCGATCGATAGCAACACCTGGAGAAATAAAAATTTCACAAGGGAAATCTATCACACTTGAACAAGCTAAATCCAGCGGTCTACAGGCCTGCATTGAAAGAATGCTGAACCTGACTGATCATCTACGGCGTCTTCGTGTCGATCGATATGAGTACGTGGCCATGAAAGTTATAGTTCTGCTACAATCCGATACTTCGGAGTTGCGAGAACCAGTTAAAGTGCGTGAGAGTCAAGAGAAAGCATTGCAAGCCCTGCAAGCATACACTTTAGCTCACTATCCAGACTCACCAGCTAAATTCGGTGAATTACTTCTTCGAATTCCAGAACTTCAGAGAACGTGCCAGCTCGGTAAGGAAATGTTGACAATAAAATCAAAAGACGGTGAAGATTTCAACTTGCTGATGGAGCTGCTGCGCGGGGAACATTGA
- Protein Sequence
- MSAPLGDVSPNVASPNSSMLSTSGTTGNLASVRGNISVTSIKCEENGRPPSAPAATTTNSTLNGIPNSNNFFNGGVRISVPKVEDSEESESELSIIESSKVNRRPNPNSKNGPRPMSWEGELSEAEDIMDTENSVSNDKQFDDSHMSIKDESRSSATIKPEYDHISVDTGAGVIFTSGSKKFQSDIVNLKYEPGLTDPATSGLNSPLLARSKTNLLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQGRHNVYGNFNGSLHHPVLYRPVLDSETQSLPTTPRRPDEVIIENDAIPSAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCPVTISTRKKCPACRFDKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPNSMLSPLMSPDASCSQANQRVGINGCMVKSEQPDTSNGNSNSSTGVSGHRSTIPPLLQEIMDVEHLWQYNEGELSRLNQPPTAGADSGNLSANPLLASTGLSTNGENTNPDLIANLCTVADHRLYKIVKWCKSLPLFKHISIDDQICLLINSWCELLLFSCCFRSIATPGEIKISQGKSITLEQAKSSGLQACIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTSELREPVKVRESQEKALQALQAYTLAHYPDSPAKFGELLLRIPELQRTCQLGKEMLTIKSKDGEDFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00424727;
- 90% Identity
- iTF_00424727;
- 80% Identity
- iTF_00936648;