Mlit001295.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- CAXIEF010000323.1:12785-17909[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.8e-11 2e-08 34.4 0.0 4 39 170 206 167 210 0.89 2 3 7.9e-11 2.3e-08 34.2 0.3 2 39 222 259 221 262 0.92 3 3 1.1e-08 3.2e-06 27.3 0.7 2 30 277 305 276 306 0.94
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGCCCGTTCCAAGTGAAATGCGAGCCTGCTTCAGACGAGGAAGACAACTGTCCGCAACTTTCTCACTTATTTCCAGACAATAAGCTGCCTTCTCAGTACCAGTGTGTCAAAGTAGTGACTCCTCACGATGTACAAACACCTTCCACGAACTTATTGCAACACCTACAGGTTACGAATGGTCTGGAGGAGCTGTCCCCGCTGGCGCCGGCGGGCCCGGCCGCCACCCCGGTGTGCGTGAAGCAGGAGCCCCGCGACACCCCCGCACTCACGCTCGAGACCCTGGAGCCCGCACCACATGCTGCGGGAAATTCGCTACTTGAAAGACACATGACGATGCTACATTCCGAGGAACTCGATGCCGGCAACTTCACGCCTTTGATGATTAAAGATGAACCAGTGACGGAAGATTTCCAACTCAGCAGTGACGAGACGAGCGAGGGTTGCCGCGAGGTGGAGCCGGCAGCGCGCTGCAGCCCCAAGAGCTGGACGCAGCAGGACATGGAGCTCGCACTCGACGCACTCAGGAACCATCACATGAGCCTCACTAAGGCATCAGCCACATACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGCCTCGGCATCGACACGCCCAAGAAGGAAGGCAGCGCCAAGTCGTGGTCGGAGGCAGACCTGCGCGGAGCGCTGCACGCCCTGCGCGCCGGGGCCATCTCCGCCAACAAGGCTAGCAAGGCTTACGGCATCCCAAGCAGCACGTTGTACAAGATAGCCCGTCGCGAGGGCATCCGTCTGGCGGCGCCGTTCAACGCCGCGCCGGTGTCGTGGCGGCGCGGCGACCTGGCGCGGGCGCTGGCAGCCATCCGCGCCGGCGCGGCGTCTGTGCAGCGCGCCGCTGCGCAGTATGGAATACCTACTGGTAAGAGAGGTCATAGTGCGAGCGAGTCGCATTTAAAACAAAGTAATAATTTTCTACCCGCAATTTTGACTTAA
- Protein Sequence
- MPGHGPFQVKCEPASDEEDNCPQLSHLFPDNKLPSQYQCVKVVTPHDVQTPSTNLLQHLQVTNGLEELSPLAPAGPAATPVCVKQEPRDTPALTLETLEPAPHAAGNSLLERHMTMLHSEELDAGNFTPLMIKDEPVTEDFQLSSDETSEGCREVEPAARCSPKSWTQQDMELALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRAGAASVQRAAAQYGIPTGKRGHSASESHLKQSNNFLPAILT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00055316;
- 90% Identity
- -
- 80% Identity
- -