Lcor025499.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lysandra coridon
Gene Symbol
Hr39
Assembly
GCA_905220515.1
Location
HG992065.1:2552683-2574097[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.069 9.8e+02 -0.5 3.6 77 173 203 309 135 328 0.51
2 4 5.6e-08 0.00079 19.6 0.1 1 20 410 429 410 435 0.91
3 4 2.9e-43 4.1e-39 135.8 0.0 164 339 473 649 450 660 0.79
4 4 0.19 2.7e+03 -1.9 0.0 382 408 654 681 647 681 0.75

Sequence Information

Coding Sequence
ATGAATACGATGGGTGACGCTGAGCCTGTGAAGGTGGAAGGGGGACATATTTCTGTGACCACCATCAGCATGTCGGGCCCGGACAATAGCAAAGGTCAATTCTCGTACAGCTCCAGCGGAGTCCGCATCAACGTGTCGTCGGACATCCACGACGAGGACTCCACAGACGCCGAAATATCCAAAATTGACTTCAATCAACATCAGTATGAGGTCAATATGCGGAACAAGAAGAAGCGGTCGAGCGGTCAGTTTGAACCTCCCAATCCCTCCCAGGAGAGACCAATGTCGTGGGAGGGAGAGCTCTCCGACTCCGAGATGGTCATAGACACCAGTGGGAATAATGACGAGAACAGCAATTCCCTTGAGCTGCAGTCATCCCGGGACTCCATAGATACTCTCCGCAATGTCACCATCAAGTCCGAGCCTCGGCACGAACAGGACGACCGCGTGCTGGACCTGAAATATAACGCGTTGCAGCCACATCAGAGAAGTCTTAGTATGAACAGGATATCAGACAGCAGTCTATCTCTGTCACGGCGGCCATCTTCCCCCGCGGGCAAGCCGAGCGCGGAATTCGAGCCGCCGCCGAATCCGTTAGCCGAAGTACAGAACCTCACCATCAAGAAGGAGCAACTTTCAGAGTTGAAATGTGAGCCGCTAAGCATGGAGAAGATCCTGAGTGTGGGTTCGCCGCTACTGGGGCGGCTGCCGCGCGTGCAGTCCAGCGCCAGCACCGACTCCGCTGTACACTCCATGTATACTCACAGCGTGTATAGCAGTCCGTCGGCGTCGCCTCGACCGCAGCGGCTGTACACGCCGTCGCTGTCGCGCAACAACAGCGACGCGTCGCACTCCTCCTGCTACTCCTACAGCTCCGAGTTCTCGCCCACGCACTCGCCCGTGCAGAGCCGGCATCCGCACCTAGTGTACCGCGAGGCTGGTGGCGTTGAGGAGGACGACGGCGGGGAGCAGCTACATCACCACCAGGGGATCAGCAGACAACAGCTTATCAACAGCCCTTGCCCCATCTGCGGCGACAAGATCTCCGGGTTCCACTACGGGATATTCTCATGCGAGTCCTGTAAAGGGTTCTTCAAGCGCACGGTCCAGAATCGCAAGAACTACATGTGTTTACGCGGCGGAAACTGTCCCGTCACTGTCGCGACGAGGAAGAAGTGTCCCGCCTGTCGATTCGACAAATGTCTGTGCTGTGGGATGAAGCTTGAAGCGATCCGCGAGGACCGCACGCGCGGCGGGCGCAGCACGTATCAGTGCTCGTACTCGCTGTCCGGCGCCGCGTCCACTGGCTCGCTGCTTGCCGCGCCCGCGCCGCCCGGGCCGCTCCGACACGCCTCCAGCCTCACTTGTGTGAACGGCCCAGCCTCGTACAGCAGTCGAGGCGAGGGCAGCAGCAGCCGCCTTACGCCTGATATACCGCCGTTATTGCAAGAGATAATGGACGTGGAGCACCTGTGGCAGTACAACGAGTCGGAGCTCCCGCACCGGGGGTCGGGCTCGAACCCCCTGCTCGCGGCGTCCGGCATCACAGCCACCGCCGCCAGCGCTGACTTCCTGGCTGATCTATGTCATGTCGCTGATCATAGACTGTACAAGATCGTCAAGTGGTGCAAGAGTTTGCCGCTGTTTAAGAATATCTCGATCGACGACCAGATCTGCCTGCTGATCAACAGCTGGTGTGAGCTGCTGGTGCTGTCGTGCTGCTACCGCGGCGTCGCCTGCCCCGGCGAGGTGCGAGTTGGCGGACCCAACGGCATCACGCTGCAGCAGAGCGCCAAATATGGTCTGACGCCGTGCATCGAGCGCATGCTGAGCTTCACTGATCACCTGCGGCGGCTGCGCGTCGACCGATACGAGTACGTCGCGCTCAAGGTCATCGTGCTGCTCACCTCCGACGCTGCGGAGCTTCGCGAGGCTGAGAAGTTCTTCATGCAAGTCGGCAAGGAGATGCTGAACCCGGCGAACAAGAAAGACGGCGACGGCCCCAGCTTTAACCTGCTCATGGAGCTGCTGCGGGGCGACCACTGA
Protein Sequence
MNTMGDAEPVKVEGGHISVTTISMSGPDNSKGQFSYSSSGVRINVSSDIHDEDSTDAEISKIDFNQHQYEVNMRNKKKRSSGQFEPPNPSQERPMSWEGELSDSEMVIDTSGNNDENSNSLELQSSRDSIDTLRNVTIKSEPRHEQDDRVLDLKYNALQPHQRSLSMNRISDSSLSLSRRPSSPAGKPSAEFEPPPNPLAEVQNLTIKKEQLSELKCEPLSMEKILSVGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRPQRLYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQSRHPHLVYREAGGVEEDDGGEQLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLCCGMKLEAIREDRTRGGRSTYQCSYSLSGAASTGSLLAAPAPPGPLRHASSLTCVNGPASYSSRGEGSSSRLTPDIPPLLQEIMDVEHLWQYNESELPHRGSGSNPLLAASGITATAASADFLADLCHVADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVACPGEVRVGGPNGITLQQSAKYGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAAELREAEKFFMQVGKEMLNPANKKDGDGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00985246;
90% Identity
iTF_00744841;
80% Identity
iTF_00934925;