Lcor002290.1
Basic Information
- Insect
- Lysandra coridon
- Gene Symbol
- sip1
- Assembly
- GCA_905220515.1
- Location
- HG992085.1:4555930-4569332[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.6e-13 1.1e-08 35.7 0.0 4 66 368 430 365 433 0.93 2 2 4.3e-49 6e-45 154.6 8.3 40 275 433 653 430 653 0.95
Sequence Information
- Coding Sequence
- ATGTCTGACGATGAAGTGATCCGCTTTGAAATAACAGATTATGATCTGGATAATGAGTTCAATCCACACAGAAGTAGAAAAGCAAAGAAGGAGCAACAAATTTATGGTGTCTGGGCAAAAGACAGTGATGAGGAGGATAACGAAGACAATGTTAGACAGAGAGTCAGGAAGCCCAAAGATTACTCTGCACCCATTGGATTCATTGCTGGCGGAGTACAGCAAGCAGGCAAGAAAAAAGATGAAACCAAAGAACTACAGCAATCTGGCGCATCAACATCTAAGCCACAATATGTCAATAGTTCTGATGAGGAGGATGTGCCAGAACCTCATGAGACAGAGACGGCCGGCATCCGCCGGGCGGGGCAAGGGATGAGAGCACCAAACCTCGGGGGAAATGTCGGAGCTTGGGAGAAGCATACTAAGGGTATTGGAGCTAAGCTATTGTTGCAGATGGGCTATCAACCTGGTAAGGGTTTGGGGAAGGACCTTCAAGGTATATCTGCGCCGGTGGAAGCCACACTCAGGAAAGGTAGAGGGGCTATCGGTGCTTATGGACCAGAGAAGTCAGCACAAAAGGCCAAGAAAGAGGAGGAGCGACGGCTCAAAGAGAAAGAAGATCAAGACAAAACTAAAACAGAGAAGAGCTACAACTGGAAGAAGTCTCATAAGGGTCGCTACTTCTACAGAGATGCAGCTGACGTCATACAAGAGGGTAAACCGACAATGCATACTATTAGCAGTAACGAGTTATCCCGCGTGCCGGTGATCGACATGACGGGTCGCGAGCGGCGCGTACTGAGCGGGTACCACGCATTACGCGCCGCAGCCCCGCGCTACGAACACGAGCCGCGCCGCCAGTTGAACAACTTTGCTGCGCCTGCGCTGGTACATAACTTGCAGTTGGTGCTGGACTGTTGTGAGCAGGATATCATCCAAAACGAACGCGAGCTCAGACAAGCGGAAGACGAGATCGTAGTACTTGAAAGAGATTTGGAAGAATGTAACATACATCTGAAGGAACAGGACGAGGTTATTGATAAGGTGGAGGCGATACTGCGCCGAGTGGAGCGGCTCAAGAACGCTGATGTGTCGCTGGAGACTGCTTACGAGGTCCTGACTGATCTGAAGGAAACCTTCCCCCAGGAATACGACGTATTCGGTCTAGGCACTATCGGCGGTAACATAGTGTCGCCGCTATTCAGCGCGTTACTGGCCAAGTGGGATCCGTTACAGCAGCCCGACCAGCCCGTAGCCACGTTCGTCAAGTGGCGCCCTCTACTCACCGAGGACGCGTTACTGGCCAAGTGGGATCCGTCACAGCAGCCCGACCAGCCCGTAGCCACGTTCGTCAAGTGGCGCCCTCTACTCACCGAGGAGTCTTACAACAAGTTGCTGTGGCAACACTTCGTGCCCAGTATCACTGCGGCTGCTGAGCTATGGAACCCCCGCAACCCGGCGCCCATGGTTCGCGTGTTCGAGTCCTGGTCTGCGGCGTGCCCGCTGTGGCTCGCACGCTCGTTCGCCGGCCGCTGCGTCGCGCCGCGCCTGCTGGCGGCCGTGCGAGAGTGGGACCCCACCCGGGACACGCAGCCGCTCCACGACTGGGTTCTACCGTGGCACGAGCTGGCCGGTGAAACTCTCCAAGCACAAACCTACCCGCTCATCCGGTCTCGTCTGTCGAGTGCGTTATCAGCGTGGCACCCGGCCGACAGTTCCGCGCGGCCGTTACTAGCGGCGTGGCGGCACGCTTGGGGCGCCGCCCTTACGCCGCTGCTGCATCATCACGTGCTGCCCAAGCTTGAGCACTGTCTTCAGGCTGCGCCGATCGATCTGCTGGGAGGAGCTACTGAATGGTGTCCTGCTTGGACGTGGTGTTTGCCGTGGATAGACCTGATCGGTGCGCCAACTATCGCGGCGCTGGCCGGTCGAGCGTTATTACCCCGTTGGCTGGCGGCGCTAGCGGCGTGGCTGAATAACGCACCTCCTCACGCTACCGTGTTGACGTCGTATACGCACTTTAAGAAAATGTTCCCTGAAGAGATTCTCAAGGAGCCCGTAGTGAGAGATGCATTCAGAAAGGCTTTAGACATGATGAACAGAAGTACAGATATCGATACAGTGGAACCACCTCCTCCGCCAAGATTCACGATGCCAGAACCCAAAGAAACATCCAGAATCAGTGACATAGTCGCTTCAACGGCTCAAGCCAAGAGTTTCAGTGAACTCCTAGAGTCCAGGTGCATAGAAAAAGGAATTACCTTCGTACCTATAGCCGGAAAGACCAGAGAAGGGAGACCGCTTTACAAGATTGGGAATATGCAGTGCTATGTGATAAGAAATGTGATTATGTATTCCGATGACGGTGGAAGAGTGTTTGGGCCGATCGGTCTAGACAAGTTATTGAATATGGTGGATGAATAA
- Protein Sequence
- MSDDEVIRFEITDYDLDNEFNPHRSRKAKKEQQIYGVWAKDSDEEDNEDNVRQRVRKPKDYSAPIGFIAGGVQQAGKKKDETKELQQSGASTSKPQYVNSSDEEDVPEPHETETAGIRRAGQGMRAPNLGGNVGAWEKHTKGIGAKLLLQMGYQPGKGLGKDLQGISAPVEATLRKGRGAIGAYGPEKSAQKAKKEEERRLKEKEDQDKTKTEKSYNWKKSHKGRYFYRDAADVIQEGKPTMHTISSNELSRVPVIDMTGRERRVLSGYHALRAAAPRYEHEPRRQLNNFAAPALVHNLQLVLDCCEQDIIQNERELRQAEDEIVVLERDLEECNIHLKEQDEVIDKVEAILRRVERLKNADVSLETAYEVLTDLKETFPQEYDVFGLGTIGGNIVSPLFSALLAKWDPLQQPDQPVATFVKWRPLLTEDALLAKWDPSQQPDQPVATFVKWRPLLTEESYNKLLWQHFVPSITAAAELWNPRNPAPMVRVFESWSAACPLWLARSFAGRCVAPRLLAAVREWDPTRDTQPLHDWVLPWHELAGETLQAQTYPLIRSRLSSALSAWHPADSSARPLLAAWRHAWGAALTPLLHHHVLPKLEHCLQAAPIDLLGGATEWCPAWTWCLPWIDLIGAPTIAALAGRALLPRWLAALAAWLNNAPPHATVLTSYTHFKKMFPEEILKEPVVRDAFRKALDMMNRSTDIDTVEPPPPPRFTMPEPKETSRISDIVASTAQAKSFSELLESRCIEKGITFVPIAGKTREGRPLYKIGNMQCYVIRNVIMYSDDGGRVFGPIGLDKLLNMVDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01217510; iTF_00405925; iTF_00744651; iTF_00403823; iTF_01248144; iTF_00288882; iTF_01178580; iTF_00164383; iTF_00933772; iTF_00786807; iTF_00925732;
- 90% Identity
- iTF_01217510;
- 80% Identity
- -