Lmon033196.2
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- -
- Assembly
- GCA_905163515.1
- Location
- LR991104.1:11408645-11413035[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2e-05 0.0022 19.5 0.2 2 21 109 128 108 129 0.95 2 17 3.6 4e+02 3.0 0.2 3 23 135 155 134 155 0.87 3 17 0.057 6.2 8.7 0.1 2 23 161 182 160 182 0.96 4 17 0.017 1.9 10.3 0.7 1 23 188 210 188 210 0.94 5 17 0.00013 0.014 17.0 0.3 1 23 247 270 247 270 0.95 6 17 4.7e-05 0.0051 18.4 1.1 1 23 276 298 276 298 0.98 7 17 2.9 3.2e+02 3.3 0.3 5 23 308 326 306 326 0.95 8 17 0.002 0.21 13.3 1.3 2 22 481 501 480 504 0.89 9 17 0.26 28 6.6 0.0 3 23 508 529 507 529 0.95 10 17 2.3 2.5e+02 3.6 0.8 2 23 535 557 534 557 0.92 11 17 1.6e-05 0.0018 19.8 0.4 2 23 563 584 562 584 0.96 12 17 1 1.1e+02 4.7 1.2 2 20 588 606 588 608 0.91 13 17 3.5e-06 0.00038 21.9 1.0 1 23 634 657 634 657 0.95 14 17 0.00032 0.035 15.7 0.5 1 23 663 685 663 685 0.95 15 17 0.072 7.9 8.3 0.1 1 23 691 713 691 713 0.97 16 17 0.0038 0.41 12.4 0.3 1 23 719 742 719 742 0.94 17 17 1.1e-05 0.0012 20.3 1.5 2 23 749 771 748 771 0.95
Sequence Information
- Coding Sequence
- ATGGAGATGGATGCCGCTCTTCCACCTGGAGTGTGCAAGCCCTGCTCCGAAAATACCATAGCGGCTATAACCTTCAGACATCTTTGTATGCAGTCGACGCATCACTGGAATGAAGCTACAACTTACCTGGCACAAATCCACACGCCGACTGACGAAGACAAATCCTACTTCGTTCTTTATACAGACCAAAAAGCTATAATAAAGTAtcagataactagattatcaaCCAAGGCTACCGCTTTGGAGAAGCTTAACGAAAGCTGTCAACAAAAACCAGAAAGAGTTCGAAGACCAAAACGGACTCAGGATCTAACTGAGGCATCCAAATGTCCTGATTGCGGCAAGGAGTTTTCTACGATCGATTACCTTAACTATCATTTAAGAAACACACTTAAACGTGCCTGTACTAAATGCGGTGAGGTTATACCTAAGAGAAAAATGTCTAAACACATGCTTTTAGATCATGATATTAAAGTTTCACCGTGCTCTGTCTGCCATAAATTATTTGACGAGGAAGCAGAAATGATAGCGCATTTGGAAAAGCATTACGTAATTAATACCCATCATTGTAACGTTTGCGGGAACGGTTACATCAACGAGCGTGCTTTGAGAGCTCATCTCTATGCCCATTCCCTATTCCACTGCAAATCTTGTAATTCGAGTTtcgaaaatataaaatgttataaataccATCAAAGACAATGCAAAATTGTCGATCGTCCGTCGACCTTCAAAAATTTTACGTGTGACCTCTGCGGTGTAACTTACAATCGGAAACCTTCATTACGCATTCACATTATTCAAAAGCATTTAAACGTTTTACCATTCGTTTGTCAAATATGTGGAAAGCGTACTTCAACCGTAGCCCATCTGAAATCGCACGAGAAAATTCACAAGACTGAACGGAAAGTGTTCCAATGTTATTGTGGTGCCAAATTAAGGACTGAACTTGGATATCAGCTGCATCAAAGAATACATACAGGTGAAAGACCATACGAGTGTGAGTTCTGTGGGGATAGGTTCCTTTCATCTTCCAGAAGGCTGGATCATGTGAAAAGGCGACATAGAGGTACAAAAGAAATGCCACACGCTTGTGATCAATGTGCCGCTCGTTTTATCAAAGAAGAGTCCCTCATACCAGTAGGCGCATGCGTAGCTTGTGCCACAACGGCACTCGCCGCTCAAGAGTTTCGCCTCTTCGTCCTAAATTCACAAAAAACGTGGCACAAAGCTCTTATCAATCTCGCCATATTGCCATTAGCGGTCTCGCCTCCTATGAAATCTATGTGCGCTTTTGTTAAACCAAGTGATTTATCAATACAGACTTTTAGAGACTATACGCAAAGCAATGCTACAACTTTATTGAATAGACTAAAGAATAGAATTTCCAAAAAACCCATAGAGAGAAAGCCCAGGGGTGCACGATCAGGCCCCTCCTGCAATTGTCCTGATTGTGGCAAAACATTTCTGAGTCCTTATTTCCTAAATATGCATTTGAAGAATAGCGGTCATAAAGAAGCTTGCCAAATTTGTGGATTGGTCGTCGCTAGGGGTAAGGAAATGAAAGACCATTTATCCTCAGTCCACAATGAGACTGCATTCCTATGTAAACAGTGCccaaatttgtttttaaatgagaTACTGCTGAAGAAACACACGAAAAAAGCTCACAAAGCAGGCGCCTTGACTTGTTCCGATTGTGGTCGCTCGTTTCCAAGGCAAGCATCCTTCGAAAGTCACTCTCAAATGCATGCAGTTAGAACTTGTCGAGCGTGTGGGGTCCAATTCACTAATCGGGGATGTTACAGAGAACATAGGTCCCAATGCGAACCAAATGCGAAACCAAACGCACAAAATTATCCTAGAAATCGTCGTTCAAATATCCGAGATCCAGCTCAATTCACTTGTGATCACTGTGGGAAAACTTATAACTCTAGACCACAGCTTAAAAACCATATAATTTGGATACATATGAATATACGACCTCACCAATGTCAGTGGTGTGGAAAAAGGTTTTATACACCGGCGCGTTTGGCTGAACACACTGTTGTCCATACGCGTGTTAGAAATTTTGAATGTGATATTTGTGGCGCGAAACTTGTTTCCAAAATGGCTGCCGTGTACCATAGACGAAGGCATACTGGTGAAAGGCCTTATGAGTGTGAAGATTGTGGTGAGAAATTCATATCGGCGTCTCGGAGATCGGAGCACGCGAAACGTAGGCACAACAAGGGTTATAGATTGCCTTGTACCAAATGCCCTGCAAGCTTTGTTAGGAAACACGAATTGAAAAAACATATGGAGAGATCACATAGGACACCTGACAATATGATATggtga
- Protein Sequence
- MEMDAALPPGVCKPCSENTIAAITFRHLCMQSTHHWNEATTYLAQIHTPTDEDKSYFVLYTDQKAIIKYQITRLSTKATALEKLNESCQQKPERVRRPKRTQDLTEASKCPDCGKEFSTIDYLNYHLRNTLKRACTKCGEVIPKRKMSKHMLLDHDIKVSPCSVCHKLFDEEAEMIAHLEKHYVINTHHCNVCGNGYINERALRAHLYAHSLFHCKSCNSSFENIKCYKYHQRQCKIVDRPSTFKNFTCDLCGVTYNRKPSLRIHIIQKHLNVLPFVCQICGKRTSTVAHLKSHEKIHKTERKVFQCYCGAKLRTELGYQLHQRIHTGERPYECEFCGDRFLSSSRRLDHVKRRHRGTKEMPHACDQCAARFIKEESLIPVGACVACATTALAAQEFRLFVLNSQKTWHKALINLAILPLAVSPPMKSMCAFVKPSDLSIQTFRDYTQSNATTLLNRLKNRISKKPIERKPRGARSGPSCNCPDCGKTFLSPYFLNMHLKNSGHKEACQICGLVVARGKEMKDHLSSVHNETAFLCKQCPNLFLNEILLKKHTKKAHKAGALTCSDCGRSFPRQASFESHSQMHAVRTCRACGVQFTNRGCYREHRSQCEPNAKPNAQNYPRNRRSNIRDPAQFTCDHCGKTYNSRPQLKNHIIWIHMNIRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECEDCGEKFISASRRSEHAKRRHNKGYRLPCTKCPASFVRKHELKKHMERSHRTPDNMIW*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01492234;
- 90% Identity
- -
- 80% Identity
- -