Ldis038566.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063467.1:880951-882258[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00039 9.6 7.8 0.0 21 52 6 37 3 37 0.89 2 12 0.00095 23 6.6 0.1 21 47 34 60 32 65 0.91 3 12 0.0019 47 5.6 0.0 18 51 87 120 84 123 0.85 4 12 0.023 5.5e+02 2.2 0.0 21 51 118 148 114 150 0.83 5 12 0.035 8.6e+02 1.6 0.0 21 48 146 173 142 177 0.85 6 12 0.0054 1.3e+02 4.2 0.0 21 51 174 204 166 207 0.84 7 12 0.0067 1.6e+02 3.9 0.2 21 44 230 253 225 263 0.77 8 12 0.21 5.1e+03 -0.9 0.0 22 46 259 283 253 286 0.82 9 12 0.0077 1.9e+02 3.7 0.0 22 47 287 312 284 317 0.84 10 12 0.0064 1.6e+02 3.9 0.0 21 52 314 345 311 346 0.86 11 12 0.0058 1.4e+02 4.1 0.1 21 44 370 393 365 402 0.80 12 12 0.027 6.5e+02 2.0 0.3 22 52 399 429 393 430 0.82
Sequence Information
- Coding Sequence
- ATGTGTGCGCACACCGGTGAGAAACCTTATAAGTGTGACATGTGTGAAAAGACTTTCAATCAAAAACATCATTTAACACGACACATTCATCTGCACTCTGGTGAAAAACCTTATAAATGTGATATTTGTGAAAAACTTTTCAGCCTTAAGCATAATTTAAAACAACATATTCGTTTGCATACAGGTGAAAAACGTTTTAAATGTGATATGTGTGAGGAAGCTTTTTATGAAAAGCATCACTTAATATTGCACTTACGTCGACATACTGGCGAGGAACCATACAAATGCGACATAtgtgataaaatttttaatagaaATGAAGATTTAAAAGTGCATGTTCGGATGCACACCGGTGAAAAACCTTTTAAATGTGGTATATGTGAAAAACTTTTCAACTTAAAGTATAGTTTAAAACTACATATTCGTTTACATACTGGCGAAAAACCTCTTAAATGTGATATGTGTGATAAAACTTTTAATAGAAATCAAGATTTAAAAGTGCATGTTCGGATGCACACCGGTGAAAAACCTTTTAAATGTGATATATGTGAAAAACTTTTCAGCATAAAGCGTAGTTTAAAACTACATAATCGTTTGCATACTGGCGAAAAACCTTTTAAATGTGATATGTGTGATAAAAGTTTCGCTCACAAGCATTCTTTAatgtatcataaaaatatacacacagGTGAAAAGCCTTATAAATGTGATATATGTGACAAGTGTTTTAGGCGAAGACAAGATTTATTTTCGCATAATCGTAGGCACACCGGTGTTAAACCTTTTAAATGTGATTTGTGTGAGGAAGCTTTTTATCAAAAGGATCACTTAATATTGCACTTACGTCTACATACTGGCGAGATACCATACAAATGCGACATATGTGATAAAACTTTTAatagaaaacaaaatttaaaagtgCACGTTTGGATGCACACCGGTGAAAAACCTTTTAAATGTGATATTTGTGAAAAACTTTTCAGCTTAAAGGGTAGTTTAAAACGACATAATCGTTTGCATACTGGTGAAAAACCTTTTAAATGTGATATGTGTGATAAAAGTTTCACTCTAAAACAACATTTAATGTTTCATAAAAATATGCACACCGGTGAAAAGCCGTATAAATGTGATATATGTGACAAGTGTTTTAGGCGAAAACAAGATTTATTTTCGCATAATCGTAGGCACACCGGTGTAAAGCCGTATAAATGTGATATTTGTGAAAAACATTTTCCCTTAAAGTATTCTTTAAAACGACATATCCGTTTGCATACCGACGAAAAaccttttgatgtgaaatatctgtag
- Protein Sequence
- MCAHTGEKPYKCDMCEKTFNQKHHLTRHIHLHSGEKPYKCDICEKLFSLKHNLKQHIRLHTGEKRFKCDMCEEAFYEKHHLILHLRRHTGEEPYKCDICDKIFNRNEDLKVHVRMHTGEKPFKCGICEKLFNLKYSLKLHIRLHTGEKPLKCDMCDKTFNRNQDLKVHVRMHTGEKPFKCDICEKLFSIKRSLKLHNRLHTGEKPFKCDMCDKSFAHKHSLMYHKNIHTGEKPYKCDICDKCFRRRQDLFSHNRRHTGVKPFKCDLCEEAFYQKDHLILHLRLHTGEIPYKCDICDKTFNRKQNLKVHVWMHTGEKPFKCDICEKLFSLKGSLKRHNRLHTGEKPFKCDMCDKSFTLKQHLMFHKNMHTGEKPYKCDICDKCFRRKQDLFSHNRRHTGVKPYKCDICEKHFPLKYSLKRHIRLHTDEKPFDVKYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00931713;
- 90% Identity
- iTF_00931713;
- 80% Identity
- iTF_00931713;