Ldis040783.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063468.1:16692072-16695501[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.014 1.6 10.7 0.8 1 23 235 258 235 258 0.94 2 17 0.001 0.12 14.2 5.8 1 23 263 285 263 285 0.98 3 17 0.0054 0.64 12.0 2.9 1 23 315 338 315 338 0.96 4 17 0.0043 0.51 12.3 1.4 2 23 399 421 398 421 0.96 5 17 0.00019 0.023 16.5 0.9 1 23 427 450 427 450 0.95 6 17 0.0025 0.29 13.0 0.4 2 21 454 473 453 474 0.92 7 17 0.047 5.6 9.0 0.7 3 23 484 505 482 505 0.89 8 17 4.9 5.8e+02 2.7 0.6 1 23 510 533 510 533 0.91 9 17 0.014 1.7 10.6 0.2 2 23 546 567 545 567 0.96 10 17 0.0044 0.53 12.2 2.2 1 23 573 595 573 595 0.97 11 17 0.044 5.3 9.1 2.1 1 23 630 652 630 652 0.92 12 17 0.0063 0.75 11.7 0.3 3 23 658 678 657 678 0.90 13 17 0.0054 0.64 12.0 0.5 2 23 691 713 690 713 0.96 14 17 0.00045 0.054 15.3 1.3 1 23 719 741 719 741 0.98 15 17 0.00041 0.049 15.5 4.3 2 23 748 769 747 769 0.96 16 17 3.8e-05 0.0045 18.7 1.9 1 23 775 798 775 798 0.97 17 17 0.59 70 5.5 1.7 2 23 804 826 803 826 0.95
Sequence Information
- Coding Sequence
- ATGGAGGaagtacaaataaatacaagtaATGAGAATGATCATGAGAATTTAGATTGGTTGAAACAAAAGCTGCAGGCGGTATGGTCTTCTCACAAATTTTGCGGTCTCTGTATGGAATACAAGTGCAATTTTTGTCCCGTTGATATGGAATTGGTTATAAATAAACAGAAGTTTTCTAGATGTCTAAAGGATATCTTAAACTATGTTTTTAATGATGATGTGGAGAGTTTAATGTTATGCCCTTATTTATGTGACAGTTGCGCTGAAAAAGCTATACAggcatatatatttattcacaaTAGTAAACAACTGTCACGGATCATGAATAATTGTATAGCCGATATATATTCCAAAGTTAATGATGTGACCCATCAACTTAACTCTACAACTGATTACAATAATGCCAACCTTATGTTGGTACTGGAAAACGATACAGATTTATACAAAAGCATAATTGATACAAAAATGATAGAAATTGTACCAACTGCTATGCCAATACCGATGAAAATAGATCCACCAAAGATAGTAACTCCAAAGAAAATTGAACCTATCAAAACTGAAGTGCAAACACCTAAAAAGATAGAACTAGCAAAAATTGTTAATAAACCAATAAAAACTACGCCAAATATAACATTGAAGAAAGGACATATTGTTATAAAACCTTTGAGTTCGGCGAGGAATCTGACACCTCTGTATAATACTTATCAATGCTCTAATTGTTCTGAAATATTTACAGCGTACAGATCGCTTAAAGAACATGAAAAAGCAAAGCATAAGAAGTCTGTATTCAGTTGTAATTTGTGTACTAAGACATATAATACGCAtcaatatttgaaaatacattACAAGACACACGAAAAGGTTAAATGCAAATTTTGTCAGATGTTACTTGCTGAAGGAGAATTAATGGATCATTTGAAAGCGAATCATGCTCAGTTAATATTTCCTTGTAAATTCTGTGATCTAGTTTATTACACACATGATTCTTTAACAACACATTTTAATAGTAgccatttaattaataatacaaaagttAAATCCCAATGTATAATGTGTTTAGGTAATATTAAAGaaagtaatataaaaatgcatAAATGCAAATTCACTTGCTCCGAGTGTTTTGTGATGCCATGTATACATTATAGATATTTAATGTCTTATAGGGAACAGATTTTGAATCATGTAAACAATGTGAAATGTATGGATTGCCATTATGTTACTGCAAGAAAGGATCATTTAATTGGACATGTTAATAGAGAACATTTAGATCATCATCCATTCACCTGTGGTGATTGTGGCCAGCAATTCTATACGAAATTAAGTCTAAAAACTCATATAGCGCAATTTCATCAAGATTTGAACTGTGAATACTGCGATTTTGGATTTAAAGACAGGAATACTTTAGAGAATCATAAGAAAATATGTAAATCTATTATAAGAGCATATGGTTGCAATCATTGTTCAGCGTCATTTGATAATGAAGAGGAATTGAGTAATCATGAGTATTTAAGACATAGCTCTAGTGTTCATGCTTGTAATTTATGCAAGAGTAAGTTTTTATCTGCTATACAACTGGAGGAGCATAGAGTAAGAGTTCATGGAGGTATCCAATGCAAAAAACGTAGGAAACACATTGAATGTTCCTTATGTGatataatgtttaaaaatatcaaagaaaTGCTTCAACATGAAAAGATTCACGGGGCTGATGAGACATTTCCATGTAAAGAATGTTCCAAACAGTTTAAAAGTCTAATGAAATTGTATGTACACAATCAAAAGCATTACACAAAAAGAGTGATATGTTCccgttgcaataaaaaagtggCTGCATCATTTTATCCTCAACATGCCGTCAGATGTCCATATAAAAACGATGGATTGAAACATGTTTGTGAAATCTGCGGCAAGGGGTTCCACTTGGACTCCTTGCTGCGCTTCCATCAGAAAATTCACATGGAACGTGAACCGTGTCCTCAGTGTAAGAAATTTGTTAAACCGTCTAGTCTAAAAAAACATATGGAACTTGTTCACGGACAGGATTTTAAGATAAAAAGGACGGCCACCATAGAATGTGATTTATGCGGTCATTTGGTTAGAAAGAAACAAGATTTGGAAGCTCATATGAACCGATACCATTTGAAGATCAAACCATATGTttgtaatatatgtaataaagaTTTTTGCGGCAAGATCCGTTTGAAAGAGCACTTAGCAACTCATTCTACGAACAATTCTTGCTTTTGTTCAGTCTGCGGTAAGAAGTTTGCTAACCGTGTGTGTTTGAAAATGCATGTTAGGATTCATACAGGCGAATCACCGTACACTTGTGATATATGTGGCCTGAAATTCAGGTCTTCTAGCATGATGAAGACTCATCGGTTGAAAAAGCACTGGTCTAAGACCGTATCGTGTCCGTTATGTGACAGTATGTTTTATATGACCAGGGAGATGAGGCATCATTTTAAAAAGGCCCATTGGAAATATAAGGATAGACCGTTTAACGTTAGAGAAGTTGAAGAATTAGGTGAAGAATTTTATTCACTATTTGAAGATGGGAGATTGCCCAAATTGGATTCGTAG
- Protein Sequence
- MEEVQINTSNENDHENLDWLKQKLQAVWSSHKFCGLCMEYKCNFCPVDMELVINKQKFSRCLKDILNYVFNDDVESLMLCPYLCDSCAEKAIQAYIFIHNSKQLSRIMNNCIADIYSKVNDVTHQLNSTTDYNNANLMLVLENDTDLYKSIIDTKMIEIVPTAMPIPMKIDPPKIVTPKKIEPIKTEVQTPKKIELAKIVNKPIKTTPNITLKKGHIVIKPLSSARNLTPLYNTYQCSNCSEIFTAYRSLKEHEKAKHKKSVFSCNLCTKTYNTHQYLKIHYKTHEKVKCKFCQMLLAEGELMDHLKANHAQLIFPCKFCDLVYYTHDSLTTHFNSSHLINNTKVKSQCIMCLGNIKESNIKMHKCKFTCSECFVMPCIHYRYLMSYREQILNHVNNVKCMDCHYVTARKDHLIGHVNREHLDHHPFTCGDCGQQFYTKLSLKTHIAQFHQDLNCEYCDFGFKDRNTLENHKKICKSIIRAYGCNHCSASFDNEEELSNHEYLRHSSSVHACNLCKSKFLSAIQLEEHRVRVHGGIQCKKRRKHIECSLCDIMFKNIKEMLQHEKIHGADETFPCKECSKQFKSLMKLYVHNQKHYTKRVICSRCNKKVAASFYPQHAVRCPYKNDGLKHVCEICGKGFHLDSLLRFHQKIHMEREPCPQCKKFVKPSSLKKHMELVHGQDFKIKRTATIECDLCGHLVRKKQDLEAHMNRYHLKIKPYVCNICNKDFCGKIRLKEHLATHSTNNSCFCSVCGKKFANRVCLKMHVRIHTGESPYTCDICGLKFRSSSMMKTHRLKKHWSKTVSCPLCDSMFYMTREMRHHFKKAHWKYKDRPFNVREVEELGEEFYSLFEDGRLPKLDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932996;
- 90% Identity
- iTF_00932996;
- 80% Identity
- -