Ldis039098.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063467.1:9974102-9976456[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 3.4e-06 0.00041 22.0 4.1 1 23 9 32 9 32 0.95 2 21 0.011 1.3 10.9 1.8 3 23 39 60 37 60 0.95 3 21 1.3e-05 0.0015 20.2 0.2 2 23 69 91 69 91 0.97 4 21 1.8e-05 0.0022 19.7 1.9 2 23 100 122 99 122 0.94 5 21 1.1e-05 0.0013 20.5 2.8 3 23 131 152 130 152 0.97 6 21 7.3e-05 0.0087 17.8 0.6 2 23 161 183 160 183 0.95 7 21 2e-05 0.0024 19.6 2.0 1 23 189 212 189 212 0.96 8 21 0.0068 0.81 11.6 0.7 1 23 220 243 220 243 0.94 9 21 0.065 7.8 8.5 0.1 2 23 256 278 255 278 0.95 10 21 4.2e-06 0.0005 21.7 2.7 1 23 304 327 304 327 0.98 11 21 1.3 1.6e+02 4.5 1.3 2 21 335 354 334 355 0.93 12 21 0.27 33 6.6 2.1 2 23 364 386 363 386 0.91 13 21 0.002 0.23 13.3 3.4 1 23 408 431 408 431 0.96 14 21 0.00029 0.034 16.0 0.7 2 23 438 460 437 460 0.96 15 21 0.00044 0.052 15.4 3.9 3 23 468 489 466 489 0.94 16 21 0.0087 1 11.3 2.2 1 23 495 518 495 518 0.97 17 21 0.22 26 6.9 7.1 2 23 526 548 526 548 0.95 18 21 4.9e-05 0.0058 18.4 1.0 1 23 555 578 555 578 0.98 19 21 0.0061 0.73 11.8 1.5 1 23 585 607 585 608 0.92 20 21 0.0026 0.31 12.9 3.3 5 23 625 644 622 644 0.92 21 21 8.9 1.1e+03 1.8 0.3 3 12 666 675 665 681 0.85
Sequence Information
- Coding Sequence
- ATGTCATATCAAAACATACTTGATTATGTATGCGACTATTGTTCAAGAACATTCACTAGGAAATATAATCTGCAAACTCACATAGAAAATTGTCATACAAATCCATCAAGCCATTGCAACATTTGCGGACAGAGTTGTGGCAGCATGTCCGGATTGCAGCTTCATCTGTCGAGAGGTCACAATAGCCTCGGTCAACCGTTCCCTGAATGCGATGTATGTGGAAGAGTTTTTAcaagaaaacaaaatattttatctcaCATGATCACAGTGCATTTACAAGGCTTAGGTGACGATATACGTTGCCTTTTGTGCGATAAAACTTTCACTACAGAGAGGAATTTGAAGAGACATACGAATCAACAGCATAATCCAAATGTAGAATATCCTATATGCCATCATTGCGATAGAGTATTTAAATCGAAACCTTCTCTTATAACCCACATACAAACCTTACACAGTACTGGTGAACGAGATTCAATTAAGTGTACATTATGCGATAAAGTTTATACTAATATACGTAATATGAAACGTCACATTGAAGTATTTCACGAAAAGAAGGGGGTATTCAGATGTGATATGTGCCCAAAAGTGTATACATCAAATCAAAGTTTACGTAGGCATTCTCGTTATACCCACACTACGGAAAATATTGAACAGTATTCGTGTAATTTTTGTGGTAAAGTTATTACGGGTAGAGAAAATTTTGATAATCATCTACAATTTAATCATCAAAGTACAGAAGAGATTAAGAATGACAAGGAAATAGTTTGCGAAATATGTCACCAAGTATATGAAGAAGAACCCGTACTACGACAGCATATAAAAAATGAGCATTCATTTGAAGAATTTTATAAGTATTGCAAGAATgcattaataaaacattatggGACTGAGTTTAtggataatttatataaatgcgAGTATTGCCAGCATTCATTTTCAAGTGTATATGAATTAAAAGACCATATGAGAGTCAGCCATGATACAGAATACTCGCTATCAACTTGCAATGtgtgttttaataaattttatagcaAAGAAACGATGGCAACTCACAAAAAATTTTGTGTACCACCTCCTAACGTGAAATCATGCATGCATTGTGATAAATTATTCACAGACATATCGAGTTTGGAATTTCACAATAGAATTTTCCATCCGCAAGCACAAATCGCAGACTTAAATATAACGGCTACAAATTTAGACGAAGATACAACATCATTTAAATGTGAAAATTGCGACCGTATATATTATAGTGAACGTTCTTTAAAACATCATGTAAAATTAAAACATACCACGGATGAGCAAGTTGAATGCGTTTATTGCAATAAGATTTGCAATAACAAGTATTATTTAGCATCTCATATCAAAATTGTACATAATAATGATTCTTGGTCGCACTGCGAATATTgtaataaacaatttaaatcGAAAAGAAATATAAGAAGACATATTGAGTATACACATTTAGGAATGCAAAGATATAAGTGTATAGAATGTGAAACGTTGTTTAAAGAGAAACGGAGTTTAAGAAAGCATGTTAGAACAAAACATCCGAATTCTGCGTTGTTTCCGCAATGCCATATTTGTCATAAACGTTTCGAGTCagcgaaatcttgtaaaatacatttaaagttGCTTCATTCATTCAATATGAATACATATCCATGTCATTTGTGTTCAGTATCGTTCAATTCGAATGAAGCGTtgaaaattcatttaaatactAAACATTTAGCCGAAGATCAAATTTATAAATGCGAGGAATGCAATCTCGTTTTCAAAGGTCAAGAGAAATTTGACAGACATAATGGGGTCCATCACGTGAATCTCATTTCTCAtgtcaaacaaaaagtgttacCGCGTTGCATTCTATGCACAAAAGATTTCAGCACGaggaaaacattaaaaaggcaTATTAAAAAGTTTCATACAGAATTTGAAGTACAGGAATTAGCGAATTTTGGTTCAAGACGGAGGCATTTCAACGTTGATTGCGAGGAATGTTTAAAGAAATTCAACAATGAGCTTCACCGTAGGACTTATCAGAagttaaaacatattaaaaattcTATTATATTCAAGTGCGATACTTGCGGTTGTTCTTATAATTGTTTAGAATATGCTATACAGCAGTATAAATTGAGGAACACCAATGTAAATAAgacaaaaactattttaagtGAATTATGTACTACGGAGATGAGCGAGGATGAGAATTTCTCCGCGAGAACTCATCAAGAATTACCAAAAATCACATCTGAACGAAATATTAAGATTGAACCGAATATTAAGAGCGAACCAAACGAGTTGGAGTATAAcgataatataaaaatagagCCAATGTCACCGTGA
- Protein Sequence
- MSYQNILDYVCDYCSRTFTRKYNLQTHIENCHTNPSSHCNICGQSCGSMSGLQLHLSRGHNSLGQPFPECDVCGRVFTRKQNILSHMITVHLQGLGDDIRCLLCDKTFTTERNLKRHTNQQHNPNVEYPICHHCDRVFKSKPSLITHIQTLHSTGERDSIKCTLCDKVYTNIRNMKRHIEVFHEKKGVFRCDMCPKVYTSNQSLRRHSRYTHTTENIEQYSCNFCGKVITGRENFDNHLQFNHQSTEEIKNDKEIVCEICHQVYEEEPVLRQHIKNEHSFEEFYKYCKNALIKHYGTEFMDNLYKCEYCQHSFSSVYELKDHMRVSHDTEYSLSTCNVCFNKFYSKETMATHKKFCVPPPNVKSCMHCDKLFTDISSLEFHNRIFHPQAQIADLNITATNLDEDTTSFKCENCDRIYYSERSLKHHVKLKHTTDEQVECVYCNKICNNKYYLASHIKIVHNNDSWSHCEYCNKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSALFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFNSNEALKIHLNTKHLAEDQIYKCEECNLVFKGQEKFDRHNGVHHVNLISHVKQKVLPRCILCTKDFSTRKTLKRHIKKFHTEFEVQELANFGSRRRHFNVDCEECLKKFNNELHRRTYQKLKHIKNSIIFKCDTCGCSYNCLEYAIQQYKLRNTNVNKTKTILSELCTTEMSEDENFSARTHQELPKITSERNIKIEPNIKSEPNELEYNDNIKIEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932863;
- 90% Identity
- -
- 80% Identity
- -