Ldis029222.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lymantria dispar
Gene Symbol
-
Assembly
GCA_032191425.1
Location
CM063458.1:16513193-16537050[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00011 0.013 17.3 0.1 3 23 96 116 95 116 0.97
2 18 1e-06 0.00012 23.7 1.2 1 23 122 144 122 144 0.99
3 18 6.2e-06 0.00074 21.2 2.7 1 23 150 172 150 172 0.99
4 18 1.2e-06 0.00014 23.5 2.3 1 23 187 209 187 209 0.99
5 18 9.1e-05 0.011 17.5 0.6 1 23 224 246 224 246 0.98
6 18 5.7e-05 0.0068 18.2 3.1 1 23 261 283 261 283 0.98
7 18 4e-07 4.7e-05 25.0 1.5 1 23 298 320 298 320 0.99
8 18 3.5e-05 0.0042 18.8 0.2 1 23 327 349 327 349 0.98
9 18 1.2e-06 0.00014 23.5 2.3 1 23 355 377 355 377 0.99
10 18 0.04 4.8 9.2 1.8 1 23 384 406 384 406 0.98
11 18 6.7e-07 8e-05 24.2 2.3 1 23 412 434 412 434 0.99
12 18 0.046 5.5 9.0 1.8 1 23 441 463 441 463 0.98
13 18 2.7e-06 0.00033 22.3 1.5 1 23 469 491 469 491 0.99
14 18 0.00052 0.062 15.2 0.7 1 23 498 520 498 520 0.99
15 18 3e-06 0.00036 22.2 1.9 1 23 526 548 526 548 0.98
16 18 0.0022 0.26 13.2 0.3 1 20 554 573 554 576 0.93
17 18 4.3e-05 0.0051 18.6 1.4 2 23 583 604 582 604 0.96
18 18 3.3e-06 0.0004 22.1 1.3 1 23 610 633 610 633 0.97

Sequence Information

Coding Sequence
ATGAATCAGCATCATCAAACACATCAAGAGGATTCAAAAGACAGCCTCATAGTACAACAACATGTTCAACATCAACAAGATCTCATGGAACAACATCAACAACAACAAGAAATGCAACAACAGGACGATGATTTAAGCTTTAAAGGAatggatgatgagggtgttgattTGGAGATGGACGCTCGACAATGTTCCCAGGGTATGGGAGTAGACATGGGATCAGTTCAAACTAAAATGGAAATGGCTAATGGGAGCCAGGGGACACCCCGGTCTAAACCTCAAGCCTGTAAGGTCTGTGGTAAAGTTCTATCATCTGCTTCTTCATATTACGTCCACATGAAACTTCATTCAGGCAATAAACCCTTCCAGTGCACTGTTTGTGACGCTGCATTTTGCAGGAAACCTTATCTAGAAGTCCATATGCGTACCCATACAGGAGAACGCCCCTTTCAATGTGATCTATGTCTCAAAAGATTTACACAGAAATCCAGTTTGAACACGCACAAACGTGTCCACACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGACATCTGTCAGATGCGGTTTACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACACACGCGCGCTGCAGGCTAAGGAACGGCCCTACGAATGCGGCATCTGCTTTATGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCATATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACTGTGCAAGCGCGACGATTTGCGTGCGAGCACTGCCCGGCGGCGTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGTGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACACACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCGGCCTTCACCTGCAAGCAATACCTGGAGATacacacgcgcacgcacacCGGCGAGCGACCGTATCAGTGCGACATCTGCCTCAAACGCTTCACCCAGAAATCCAGTCTCAACATTCACAAGCGGACGCATTCAGTGCAGGGCCGACCGTTCCAGTGCCTGCAGTGCCCAGCCGCCTTCACCTGTAAGCAGTACCTCGAGATACACAACCGGACGCACACCGGAGAGCGGCCCTACCAGTGTGATGTATGCCTCAAGAGATTCGCGCAAAAGTCTACACTTAATATACACAAAAGAACGCACACAGTGCAAGGGCGGCCGTATCAATGTATGGAGTGTCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATTCACATGCGCACGCACACCGGTGAAAAGCCATTCGAGTGTGATGTCTGTTACAAACGCTTCACGCAGAAATCCACCCTGAACATTCACAAGCGAATTCATACCGgcGAACGCCCATATGCTTGCGATATTTGCCAGAAAAGATTCGCGGTGAAAAGTTACGTAACAGCGCACAGATGGTCTCACGTGGCGGATAAGCCGTTGAACTGCGACCGGTGTTCAATGACATTTACGTCCAAGTCACAGTTCGCGCTGCACATTCGCACTCACGCGTCCGGCTCATGCTACGAATGTAGTGTCTGCGGACGATCCTTCGTCAGAGACAGTTATCTCATAagACACCACAATCGTGTCCACCGCGAGAATCACAGCAACGTGTCGGCGAACAGCATGGGCACATCCATAGCAACTAACACAAATAATACGAATAACGGCAGTTTTGACTCTCCTGGCGTTTGTGACTTAAGTTTTGTACCAATGGTGAATCGTTACATGACATCCCAAGGAACACAAGTATCCATGCAAGATACAAACAAAATGTCAGCCATGTCGCCGCAATCAATCACTTCCATTTCGTCTCCGCCCCCCTCGCATACGCCTACGCCCCAACCCCAGATGTCTGGTCAATTGCATCTTGCTGACTGA
Protein Sequence
MNQHHQTHQEDSKDSLIVQQHVQHQQDLMEQHQQQQEMQQQDDDLSFKGMDDEGVDLEMDARQCSQGMGVDMGSVQTKMEMANGSQGTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCDICQMRFTQSSSLNRHKKIHTEEHTRALQAKERPYECGICFMRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTVQARRFACEHCPAAFARRPYLDIHMRTHTGERPYQCDVCLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGEKPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHASGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSMGTSIATNTNNTNNGSFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTNKMSAMSPQSITSISSPPPSHTPTPQPQMSGQLHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_01076785;
80% Identity
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