Ldis003120.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063441.1:35368598-35370527[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-10 8.2e-08 33.2 0.0 2 37 16 51 15 58 0.90 2 2 9 3e+03 -0.6 0.0 22 30 142 150 131 151 0.78
Sequence Information
- Coding Sequence
- atgcCGCGTAATTACGAAAGGAAAACCTTGCGGGCTTCTTGGTCTGACGGGGACTTAAATGAGGCTATGCAAAAGGTGAGCAATAAGGAGATGGGAGTCAACGAGGCCTCCAGGGCTTACAATATCCCTTCAAGAACCCTTAGACGACATATGCTAACAGGGAAACCCAAAGTACCACTCGGGAGACCGCCCGTTTTTTCACAAGAGCACGAGAAAAAATTAGTAGCTCATATAAAAAAACTGGAAAAGGTTGGCTTTGCACCTGACCGTAAGGATGTCAAAGAAATGGCCTTCCAGTTAGCTCAAAAACTTAGCATTAAGAATCCATTCTCAAAAGATACTCAACAAGCAGGTAATATTTGGTTTAACTGGTTCTTGAAACGTAATCCTGAATTGAGTCAGCGAAAGTCTGAAGGTTTGTCACTCGCTAGAGCTTATGGCGTTAATCGAGAAGATGTTAATGATTTTTTCACACTGCTAGCTCAAGTATATGAAGACAATGACTTAGGTCATCATCCAgatcaaatatttaatatggACGAGACCggcattcaaataaataataaacctgGCAAAGTAATTGCTAGCAAAGGAGCTAAAGATGTTTACACTTTGACTAGTTGCGAGAAAGGGGAAAATGTGACAGTCATAGCTTGCTGCAATGCTCAAGGTAACTTTATGCCACCTGTTTTGATTTATAAAGGTACCTACAGTAAACCTCAGTTTTCTGAGGGACTGCCACCAGGTTCACAAATATTTATGAACAAAAAGTCTTCATATATAAATTCTGAACTTTTTATGAAATGGTTCGAAGAGATATTCTTACAAAATAAAAGCCATGGAAAAGCTCTATTGATACTGGATGGTCACAGTGCACACAGTAACAATATTCGTTTGTTAGAAGTGGCCAAAGAAAATAATGTTACTTTGCTATGCTTACCAAGTCACACCACTCATGCACTCCAACCACTGGACAGGGCATTTTTCAGGCCTCTCAAGGCTTGGGGGAAGGCTGCTAGTGTATCTAATGGTATAGCTGCGTTAAAGTCCTGTGGAATCTACCCATATGATCCAAATGCCATACCAGAACATTATTTTTCACTCTCAGATACGTTGCGAGAACACGATCTCATAGATATTAATCAAGGAAATAGTAATGTTAATGAATTAGGTGCCAGTTATTCAAAAGTACACAACATTGACAACTATCGTGCAGGAACCGAACCAACAGCTTCGGCAGTGGCAATAACTGAAAAACATATGGGTCCAGAAAGTGAATCTACCTATAACAAAGAAAATATGATTACAGATAATGTTGTACAAGTTACTGTTCCTGCATCTGAAAAAACACCTCAAAAAGGTCGAGAACTGCACTCAGAATTTATAGTAGAAACACCTACAAAAGTTTTGACGAACATTCATCCCATACCTAAATTACCAGCAATGGTGTTAAAGAAAAAGCAAAGGGCTCTTGTTTTGACATCTccagaaaatatacaaaagaGGAAAGCGATTGAAAAGAGAAAGAAGGTTGTTGTGACGAAGACATgcgaaaaaaataaagtaacaaAGGAGGGTAAAAAAGGAAAATcgagaaaaaagaaaatgactatttcatcttcatcatcagagagtgataatgatgaagaaaattataagaGCCCATCGAACGaggatatttctgatgaagagaACAGGTGCATTGAATGTACAGAAAATTATTACTGCACGACTTCTAAAGAAGATTGGATAAAATGTTCATCATGTTTATCTTGGATGCACGAGTTTTGTACCATGTATAATCCTCTTTGCAACGTTTGTGGTAAAATAGCTAAACGTCAAGCTGTCAATAAGCCTAGgaagacaaaaaagaaataa
- Protein Sequence
- MPRNYERKTLRASWSDGDLNEAMQKVSNKEMGVNEASRAYNIPSRTLRRHMLTGKPKVPLGRPPVFSQEHEKKLVAHIKKLEKVGFAPDRKDVKEMAFQLAQKLSIKNPFSKDTQQAGNIWFNWFLKRNPELSQRKSEGLSLARAYGVNREDVNDFFTLLAQVYEDNDLGHHPDQIFNMDETGIQINNKPGKVIASKGAKDVYTLTSCEKGENVTVIACCNAQGNFMPPVLIYKGTYSKPQFSEGLPPGSQIFMNKKSSYINSELFMKWFEEIFLQNKSHGKALLILDGHSAHSNNIRLLEVAKENNVTLLCLPSHTTHALQPLDRAFFRPLKAWGKAASVSNGIAALKSCGIYPYDPNAIPEHYFSLSDTLREHDLIDINQGNSNVNELGASYSKVHNIDNYRAGTEPTASAVAITEKHMGPESESTYNKENMITDNVVQVTVPASEKTPQKGRELHSEFIVETPTKVLTNIHPIPKLPAMVLKKKQRALVLTSPENIQKRKAIEKRKKVVVTKTCEKNKVTKEGKKGKSRKKKMTISSSSSESDNDEENYKSPSNEDISDEENRCIECTENYYCTTSKEDWIKCSSCLSWMHEFCTMYNPLCNVCGKIAKRQAVNKPRKTKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932343;
- 90% Identity
- iTF_00931159;
- 80% Identity
- -