Ldis028489.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- -
- Assembly
- GCA_032191425.1
- Location
- CM063457.1:28176690-28205603[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.2e-12 3.1e-09 37.8 0.0 4 39 176 212 173 216 0.89 2 4 1.8e-10 6.2e-08 33.6 0.3 2 39 228 265 227 269 0.92 3 4 7e-14 2.4e-11 44.6 0.0 2 45 283 327 282 327 0.96 4 4 2.7e-16 9e-14 52.3 0.0 2 43 335 377 334 379 0.94
Sequence Information
- Coding Sequence
- ATGCTCGGCCACTGTCTAACTCAAGTCAAATGCGAGCCACTGTCGGATGAAGAGGATAGTGAAACACACTTCGCGCACACATATCTGTCCAATCAGctAACATCACAGATCCATCCAGTCAAAGTAGAAAGGCAGCAAAATAACGATGAAGATACTTCGTCAACTTTGCTACAAGAACTacagGGCAATGGGTTGGAGGAGTTGGCACCGTTGGCGCCGGCGGCTCCGGCTGCAACACCAGTTTGTGTTAAACAAGAACGCGTGTCACCACCGGCTTCCACTCTAGAGACCCTCGAATCAGCAACGCAACATGCTAAGAGCACATCGCTGCTGGATCGACACCTGGCTCTGATTAATGGCAAAGAGGCTCCCGAATCAACGGACTTCATGCCATTGTTAACTGTGAAGGATGAACCATCATCTGAAGGTGAACAACTACATCTTAGCGGAGAAGATACGAGTGATTCTTGCGGTCAGCAGAATTCCCCGATACCCAGGCACAGTCCCAAGAGCTGGACACAACAAGACATGGATAAAGCGCTTGACGCACTGAGGAATCATCAGATGAGTCTTACTAAGGCATCAGCGACCTACGGTATTCCATCAACGACACTATGGCAGCGAGCTCATAGACTGGGAATTGATACTCCGAAGAAGGAAGGTGCAGCTAAGTCATGGAGTGAAGCAGACTTACGCGGTGCACTGCACGCTCTTCGCGCCGGCGCTATATCTGCTAATAAAGCTAGCAAAGCTTATGGAATACCAAGTAGTACGTTATACAAGATAGCACGTCGCGAGGGCATCCGATTATCAGCTCCATTCAATGCGGCGCCGACGTCTTGGCGGCGGGCTGACTTGCAGCTGGCGTTAGCTTCTATACGCTGCGGTGCTAGTTCTGTACAACGTGCAGCTTCTACTTACGGAATACCTACTGGCACTCTATATGGTCGGTGCAAACGAGAAGGTATTGAATTATCGCGATCCAATCCAACACCGTGGTCTGAAAATGCTATGGGTGAAGCTCTCGAAGCTGTCAGagTGGGTCAAATGTCAATAAACCAGGCAGCGATACACTTCAACTTGCCATATTCCTCGTTATATGGAAGGTTTAAGAGATGCAAGTATCAGATGCAGAGTATCACTCAAAACCAGCAACAAACTGCAGATATTCAGAAGACCGAAATGGCTCTTCAACCTCTCGAAGTACATCAATACTATCATCAAGTACCAACTTCGTATGACAACGAaacgcacacatacacacacatgtCCGAATACTCTCACGACACACATATGCATGATCAATACGGTCAATATTATTCAAGTTTTAATAGTATAGCGACGAGTTGA
- Protein Sequence
- MLGHCLTQVKCEPLSDEEDSETHFAHTYLSNQLTSQIHPVKVERQQNNDEDTSSTLLQELQGNGLEELAPLAPAAPAATPVCVKQERVSPPASTLETLESATQHAKSTSLLDRHLALINGKEAPESTDFMPLLTVKDEPSSEGEQLHLSGEDTSDSCGQQNSPIPRHSPKSWTQQDMDKALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQLALASIRCGASSVQRAASTYGIPTGTLYGRCKREGIELSRSNPTPWSENAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQSITQNQQQTADIQKTEMALQPLEVHQYYHQVPTSYDNETHTYTHMSEYSHDTHMHDQYGQYYSSFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01491801;
- 90% Identity
- -
- 80% Identity
- -