Llin006645.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lygus lineolaris
Gene Symbol
Hivep1
Assembly
GCA_030264115.1
Location
JAEMON010000002.1:9862339-9892704[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.0012 0.11 13.7 0.1 1 23 202 224 202 224 0.98
2 8 0.032 3.1 9.2 2.5 1 21 230 250 230 254 0.85
3 8 2e-05 0.002 19.3 0.6 1 20 427 446 427 448 0.95
4 8 1.7e-06 0.00016 22.7 2.4 1 23 901 923 901 923 0.99
5 8 6.3e-06 0.00062 20.9 2.8 1 23 929 953 929 953 0.92
6 8 1.9e-05 0.0018 19.4 0.4 2 23 1292 1313 1291 1313 0.96
7 8 0.00023 0.022 16.0 2.2 1 23 1319 1343 1319 1343 0.93
8 8 0.0082 0.8 11.1 3.4 1 23 1364 1388 1364 1388 0.92

Sequence Information

Coding Sequence
ATGCCTCCGCGTTTTCCCGCTTCTTGTACAACCCTCCTGTTACCCGCTAACGCTCCCGTAGCCTTTCCCCGAGCCTCTCGATCGATCCCGGCTTACCTCCCGCCTCCCCTGGTCCACTTTATCCCTCCGCTGGCCCACCTTTCCCCTCCGCTGTCCCACCCTTCTCCCCCATCTCTGACCCACCTTCACTCCGCCTCCAGTCCACATTCCCCTGCTCCTGTGGGACTCAACCTGCTCCCTTCCGCGTCCAACCTCCTCTTCCCTGAATCAGAGCCCCATCGCTTCCTTCTACGCCCCTTCGGACCCtcaacgaattttcgagaaaacaaaacatctgGTAACAGCAGCAGTAAGGAACAGCTACTCAACTCATTTCAAGAGCCGTTGAGGATCCTCGATGATAACAATGATAAACAAGTTCAAGAAAACGGACTGGATGGATATAAGATGGTTAAGGAGAACGACTCATCGAACAGATACCTCCAcaagaaattcaagaaaattgcTACGTTGGAAGACACCTCTCCAAAAAAAGAGAAAGGAGTTCTGTATGCGATTCCATCGGAGGAAAGTGATGAGGCGAAGCCCACCTCTGATGGGAGGTATGTCTGTCCTTACTGCAAGCTCTCGTGGTCCAAGCCTTCAGTCCTGCAAAAGCACATCCGAGCTCACACCAACGAGCGACCCTTCCCATGCCTTCCTTGTGGGTTTGCCTTCAAGACCAAAAGCAACCTTTATAAACACTGTAGATCGAGAGCGCATACCCTTAAAATCGACGGGCAAAGCTCAGAAGATGACGATGGGGGTTCTCCGTCCTCTGAGTTGTCGAACAAGCCGTACAAACCCAAATTTCATCTCCCGGAGACGAGCGTGTCCTCGGCATCCACCTGCTCCTCACCTTTCAGTTCTTCCCCCAGCCCTGATCTCCTCAATGCTCATATCAATAAGCTCATCACGGAGAACCAAGCGATGATCTTCGACACTGATTGGGCTTCTACCATCAAGAGAGAAGAAACTCCGTCCCCTCCAAGGAACGGAGATGTCGCCCTCATGCTGGCTCAGTACCAGCCAGTGCCGATGTCCCACGAACCCGAAGATCTGTCTTCCACATCGACGACTTCTGAACCTCTGAACCTGACAGTTAAGGAACCCAGGAAAAGAGGTATATCGGAAGCCAGCTCCTGCATACTATCCCCTCCCAAAGAATCCATCATGAAAGACCTTCTCATACGGCATAAGGAGATTCCTGATCTCACTAGAATAACTGAAGAAGTCCTGTATCCCTGTCCTCATTGTAAAGTAGTCTTTCGTACCTCGGATAACCTCAACACCCATTTATTTTCGTGTAAACCTAAGTCTTCCCCAGGCCCTCTGCTAGGCAAAACACCTCTTATTGATACCTTCGTAAAAGATAATattaagaaaagaaaagtaGACTTCAGTAAATTTGAATGTGCCAAAAGTTCTTTGAAGTTGTTCGGTGGTGAAGTGAAAATTCTTGACACCACTGACAATCGGACACTAAGATTAGATTTGAATAAGGAGTGCGCGAAAAAAGACGCTCAAGTTTTAACGTTTGCCAAAACAGGACTAAATGCAGTTGGTGGCACAATGGTGCAATCCGAAACGAAGGAATCCAAAAATGCTTACCCTGAGAAACTAGTGCTCCCAAGCGTTGCGACTCCAACACTCAAAGTTCCTGGGATTAGTACTCCAGTGCAGGTTCCCCAGCTTAGGTTCCCTCCTTCACTTAATCCTCTGACGAGCATCACAGCGTTCAACCCTTTGACTCTTCCACATCCAGCCTCCCTGTCCAAACTGAGTCCATTAAAAGCCTCTCCAACGCCCTACAACGGCGGCGTGGGCACCATCCTTCACGCTGGCAAAGCGATACCCTTCGTCCCTGGTATGCCTGGACCCAACACGCTTCTCGCCTCACCACCTCCTCTCGTCCCTTACCAGGAGCAAAGCGTCATCATCAGGTCGCCTCTTCCACCGCTTCCGAAGGAGTCCGTCAAGCCATTGCCTTCACCCGTCATACATGAGCCACCAACACCACCAGCCGTGGTCGCTAAAACTGAGGAGCTGAAGGAGGTTATCAAAAGGAGCAGCGAGGGTCAGGAGAGGAAGTTCCTGAGACCGAGTTCCCTACCTCTAAAGCCTGGAACATACACCCCCAAGAAACAGTTGAACACTCCGCTACACTCGACGTCGCTCATCTCCCCTGAAACCCCTCGCCCCAGGAAGTCCTACGGCCAGCTCTACCTCAACGGCCACGCTTACACCTACCTGGGCCTCAAGTGCTCCACCAGGATGTTCTTCTGTACGCTCAACAAGCCCCAACCCATCTACGTTCCTCTGGCGCCTGATCAGTACAAAGTATCCATGTACTCTAACTGGACGATATGTTCGGACGCGAGTCCAACTCCTCCTGGCATCGACACGAGGAAAGCTATGTCCAGCTACGACTCGAGGAATAGAAACAGCAGCTACACGTCTGCGAACCGCAGCAAGCAAGATATCATCACTCACTCCTCCTACAAATCAGCGCCGACCGAATCCGAAAAAAGTCCTCTCTCGGCAAATTCCACTTTGAAAATCGACGAAAGTGACGTCTCTGCCGACAACATGCAGGTTTGCGAAGGTGGATTTGAGTCAAACGAAGAATACACTTACGTCAGAGGACGAGGGCGGGGGCGGTACGTGTGCAAAGAGTGCGGAATCCGATGCAAGAAACCCTCCATGTTGAAGAAACACATCCGAACGCACACCGATCTCAGGCCTTACACTTGCAAATATTGTGCTTTCAGTTTCAAAACGAAAGGTAACTTGACCAAACACATGAAATCGAAAGCGCACTACAAGCGATGTATCGAACTTGACATCATTCCTGTGCCGACTACCATCGACAGCTGTTACATCGACGATGAATGTAGCAGGAGCCAAgGAGACTGGGGCTCAAAGGATGATCTCGGTGGAAATGACGACGAATCCGACGAGACTGACGAGGATGAAGATGAAGACGAAGATGAATCGGAGGACGAGGGTTACGAAGGAGACGAGTGTAGGATGGAACGAGAAGCTGCAAAATCTCTTCTCACTCTATCTGAAGTAACCTTAGAAACTGCTCATCGTCAATACGTCAGCGCTGGATTGGTCTCTTCATGTTCCAAGCCCCGCACTTATCCTTACTCGTTATCTCCCCATCAGGTTGAGCCTGTCTCAATCGAAAGGGCGGCCAAAGTGGACATGTGGAGGTCTGACGTGTTGTCGCTTACTAAAGACTGCCAGGACTTGGATATAACCGTGAGACTCACCCCAAGCAGCGAGCCTGCTGAGTCGACTCGGCCGATGGATCTCAGCAACAAGTCCACAGCACTGTTCCAAGGCGGCCCTAAAACTCCTGTGATAACGTCTGTGGGTGGGCAGGCCCACCTGCTCGCCTCAATCTGTTCAACGACGGAAAAACTGCCGACGACCCCGACGACGGAATATCCTGAGGACAGCAAGCTTCTTCACAAGTACCTGACAGCAGTGACCGTAAGAGATCAGCAGATAAAGTTGCAGCAGCAGCGCAAGAGGTTGCAGGAACTACCTGTTGAGAGGCTACTGGAGCCTGAACCATCGAAAACCACGCTACCCCAACCTCAACCTCATGAAGAAGAAATTAAGAAGGTGGAGGAACCAATTGCGGAAGAACGAATCCTAGTCCCCAGGAGCGAACCTCCTACTTCGTCTGTGATGTCTTTGAAACGTGCGGATTCACCGCCCTCCCAAATCTCACCCAGTAGCCCTGGCAACAAGAAACAAGCTGAATTCAGGGAACCGGCGTCAGCTCTTAGTTACATTAGTTCTACTGAGGATGGGAAGAGCATGTGCAGCGTCTGCAATAAAGTGTTCAACAAACCGAGTCAATTGAGGCTACACGTGAACATCCATTACTTTGAGCGGCCTTTCAGATGCGAATCCTGCGCCGTTTCGTTCCGAACCAAAGGTCACCTTCAGAAGCATCTTAGGTCACTTTCTCATCTCAACAAGGTGAACATGAACTCCACTTTTGGGACTGCAACGACGAGCAACCCCAGGCCCTTCAAATGTGACGACTGCAAGATCGCTTTTCGGATCCACGGTCACCTCGCCAAACACTTCAGGAGCAAAATGCACATCATGAAGCTCGAGTGTTTGGGGAAGTTGCCCTTCGGGACGTATGCTGAATTGGAGAGATCCGGGATCAATATGAACGATATTGATACGACAGACTGCGAGAACTCCCTTGAGAGTTTACAGGTCCTGGCCCAGAAACTGTGTCTAGACAAGGATCCGTTGAAACCCGATCACTGGGACAGCGGCGACCACTCGCGCGACATGATGGGCGGCAGCGCCTCGGAAGATGAAGCCGGCGAGCGAACAGACGTCGGTCGCTCGAGCGACTGCGAGCCCGGCGAAGAGACTGTGAGATGA
Protein Sequence
MPPRFPASCTTLLLPANAPVAFPRASRSIPAYLPPPLVHFIPPLAHLSPPLSHPSPPSLTHLHSASSPHSPAPVGLNLLPSASNLLFPESEPHRFLLRPFGPSTNFRENKTSGNSSSKEQLLNSFQEPLRILDDNNDKQVQENGLDGYKMVKENDSSNRYLHKKFKKIATLEDTSPKKEKGVLYAIPSEESDEAKPTSDGRYVCPYCKLSWSKPSVLQKHIRAHTNERPFPCLPCGFAFKTKSNLYKHCRSRAHTLKIDGQSSEDDDGGSPSSELSNKPYKPKFHLPETSVSSASTCSSPFSSSPSPDLLNAHINKLITENQAMIFDTDWASTIKREETPSPPRNGDVALMLAQYQPVPMSHEPEDLSSTSTTSEPLNLTVKEPRKRGISEASSCILSPPKESIMKDLLIRHKEIPDLTRITEEVLYPCPHCKVVFRTSDNLNTHLFSCKPKSSPGPLLGKTPLIDTFVKDNIKKRKVDFSKFECAKSSLKLFGGEVKILDTTDNRTLRLDLNKECAKKDAQVLTFAKTGLNAVGGTMVQSETKESKNAYPEKLVLPSVATPTLKVPGISTPVQVPQLRFPPSLNPLTSITAFNPLTLPHPASLSKLSPLKASPTPYNGGVGTILHAGKAIPFVPGMPGPNTLLASPPPLVPYQEQSVIIRSPLPPLPKESVKPLPSPVIHEPPTPPAVVAKTEELKEVIKRSSEGQERKFLRPSSLPLKPGTYTPKKQLNTPLHSTSLISPETPRPRKSYGQLYLNGHAYTYLGLKCSTRMFFCTLNKPQPIYVPLAPDQYKVSMYSNWTICSDASPTPPGIDTRKAMSSYDSRNRNSSYTSANRSKQDIITHSSYKSAPTESEKSPLSANSTLKIDESDVSADNMQVCEGGFESNEEYTYVRGRGRGRYVCKECGIRCKKPSMLKKHIRTHTDLRPYTCKYCAFSFKTKGNLTKHMKSKAHYKRCIELDIIPVPTTIDSCYIDDECSRSQGDWGSKDDLGGNDDESDETDEDEDEDEDESEDEGYEGDECRMEREAAKSLLTLSEVTLETAHRQYVSAGLVSSCSKPRTYPYSLSPHQVEPVSIERAAKVDMWRSDVLSLTKDCQDLDITVRLTPSSEPAESTRPMDLSNKSTALFQGGPKTPVITSVGGQAHLLASICSTTEKLPTTPTTEYPEDSKLLHKYLTAVTVRDQQIKLQQQRKRLQELPVERLLEPEPSKTTLPQPQPHEEEIKKVEEPIAEERILVPRSEPPTSSVMSLKRADSPPSQISPSSPGNKKQAEFREPASALSYISSTEDGKSMCSVCNKVFNKPSQLRLHVNIHYFERPFRCESCAVSFRTKGHLQKHLRSLSHLNKVNMNSTFGTATTSNPRPFKCDDCKIAFRIHGHLAKHFRSKMHIMKLECLGKLPFGTYAELERSGINMNDIDTTDCENSLESLQVLAQKLCLDKDPLKPDHWDSGDHSRDMMGGSASEDEAGERTDVGRSSDCEPGEETVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00386641; iTF_00145875;
90% Identity
iTF_00145875;
80% Identity
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