Basic Information

Insect: Lygus lineolaris
Gene Symbol: -
Assembly: GCA_030264115.1
Location: JAEMON010000012.1:9490801-9510399[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3.1 3e+02 2.9 0.0 4 16 12 24 11 25 0.88

2 17 6.1e-06 0.00059 20.9 1.2 1 23 68 90 68 90 0.98

3 17 1.5e-06 0.00014 22.9 3.6 1 23 160 182 160 182 0.97

4 17 2.4e-05 0.0024 19.0 5.9 1 23 188 210 188 210 0.97

5 17 2.3e-05 0.0022 19.1 2.8 1 23 214 236 214 236 0.97

6 17 7.5e-05 0.0073 17.5 7.4 1 23 242 264 242 264 0.98

7 17 0.0065 0.64 11.4 3.6 1 23 270 292 270 292 0.95

8 17 0.0038 0.37 12.1 3.6 1 23 298 320 298 320 0.96

9 17 1.4e-06 0.00014 22.9 2.1 1 23 326 348 326 348 0.98

10 17 1e-07 9.9e-06 26.5 1.6 2 23 355 376 354 376 0.97

11 17 3.4e-07 3.3e-05 24.9 1.9 2 23 383 404 382 404 0.97

12 17 1.3e-07 1.3e-05 26.2 1.5 2 23 411 432 410 432 0.97

13 17 1.3e-07 1.2e-05 26.2 0.3 2 23 439 460 438 460 0.96

14 17 4.5e-07 4.4e-05 24.5 0.3 2 23 467 488 466 488 0.97

15 17 4.3e-07 4.2e-05 24.5 0.5 2 23 495 516 494 516 0.96

16 17 5.9e-07 5.8e-05 24.1 0.2 2 23 523 544 522 544 0.96

17 17 2.2e-07 2.1e-05 25.5 2.6 2 23 551 572 550 572 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3.1	3e+02	2.9	0.0	4	16	12	24	11	25	0.88
2	17	6.1e-06	0.00059	20.9	1.2	1	23	68	90	68	90	0.98
3	17	1.5e-06	0.00014	22.9	3.6	1	23	160	182	160	182	0.97
4	17	2.4e-05	0.0024	19.0	5.9	1	23	188	210	188	210	0.97
5	17	2.3e-05	0.0022	19.1	2.8	1	23	214	236	214	236	0.97
6	17	7.5e-05	0.0073	17.5	7.4	1	23	242	264	242	264	0.98
7	17	0.0065	0.64	11.4	3.6	1	23	270	292	270	292	0.95
8	17	0.0038	0.37	12.1	3.6	1	23	298	320	298	320	0.96
9	17	1.4e-06	0.00014	22.9	2.1	1	23	326	348	326	348	0.98
10	17	1e-07	9.9e-06	26.5	1.6	2	23	355	376	354	376	0.97
11	17	3.4e-07	3.3e-05	24.9	1.9	2	23	383	404	382	404	0.97
12	17	1.3e-07	1.3e-05	26.2	1.5	2	23	411	432	410	432	0.97
13	17	1.3e-07	1.2e-05	26.2	0.3	2	23	439	460	438	460	0.96
14	17	4.5e-07	4.4e-05	24.5	0.3	2	23	467	488	466	488	0.97
15	17	4.3e-07	4.2e-05	24.5	0.5	2	23	495	516	494	516	0.96
16	17	5.9e-07	5.8e-05	24.1	0.2	2	23	523	544	522	544	0.96
17	17	2.2e-07	2.1e-05	25.5	2.6	2	23	551	572	550	572	0.97

Sequence Information

Coding Sequence: ATGAGAGCAGAGTCGCCGATACTCCCGGCCCCGAAcTACTGCGGGACTGATTTTACTCAACCTGCTGCTCTGATTGGCGTGGGAACTATGGGTGACGTCAAGGCCGAACTCACAACTGCGCATGCTCTCAAAGTCAGCATGACGCCAGAAGAGCTGAATTCTATATTCTGCCACGAAGTTTTTGGCTCCCTGAAAGGAGGACATCAGTGCACTGTTTGTGGCAGGGTGTTCCCTTACCGTTATCAACTGATGGTTCACGCACGATACCACACGCTTCCCGAAGAAAATGGCGGAGGTATCGTAGAAGGTGACGTGGTAGCCGCTGCCGCTGCAGTTGCCAAGGAGTGGAACGGTCATGCACTTGTGGAAGCTCTGCCACAAGCCGCCATTGCTGGAACAGCCACAGCAGTCGTGGCAACGGCTGCAGCTCCTGCCCCAACACCCACAGCTACTACTGCAAACGGTACGCAAAAGAATCATATTTGCACTCAGTGCGGACGAGGGTTTTCTCGCAAGGAGCATCTCGCCAATCACATGAACAGACACACAGGTCAAAACCCACACGAGTGCCATTTGTGCCCGAAGAAGTTCTCACGAAAGGACCATCTGGACTCGCACCTCAGGGCCCACGAGGCGGACTTCAAATGTCACGTTTGCATGAAAGTGTTCAGTCGTAAAGAGCACCTCATCGCTCACGTGCAGTGGCACACCGGATCCTCCCCTCATCGGTGTCATCTTTGCCGGAAGACCTTCACCAGGCGGGAGCATCTGGTGGCTCACGTCCGTCAGCACACTGGAGAGTCTCCCCACATTTGCCGGTTCTGCGCTAAGTCCTTCACAAGGCGGGAGCATGTCATCAACCACGAACGGGGGCATACGGgTGAATCTCCGCACGTTTGCCGATTCTGCGCCAAGTCCTTCACTAGGAGGGAACACGTCATTAACCACGAGCGTGGGCATACAGGTGAGACGCCGTTCAAGTGTAACCTCTGCCCCAAAGCTTTCGCCAGGCGCGACCACCTGGTCAACCATACTCGTCAACATACAGGTGAGACCCCGTGGAGGTGCGTGGAGTGTGGGAAGGCCTTCACGAGGAAGGAACACCTCACCAATCACGTCCGGACTCACACAGGGGAAACGCCATGGAGTTGCCTCGAGTGCGGGAAGGCGTTCAGGAGGAAGGAACATCTCACCATTCACACTCGGACTCACACAGGGGAAACACCATGGAGTTGCAACGAGTGCGGGAAGGCATTCAGGAGGAAGGAACATCTCACCATTCACACTCGGATACACACAGGAGAGACGCCATGGAGCTGCACTGAGTGTGGAAAAGCATTCAGGAGGAAGGAAAACCTCACCATACATGCCCGAATCCACACAGGGGAGACGCCATGGAGTTGCACCGAGTGTGGAAAGGCGTTCAGGAGGAAAGAAACCCTCATCATTCATACTCGGATTCACACAGGAGAAACTCCATGGAGTTGCGGCGAATGCGGAAAGGCCTTTAGGAGGAAGGAGCACCTGACTATCCATGCACGAATTCATACTGGGGAGACACCGTGGAGTTGCAACGTTTGTGGGAAGGCGTTCAAGAGGAAAGAAACCCTCACTATACACGCTCGGATTCACACAGGAGAGACGCCCTGGCGTTGCGGGGAGTGCGGGAAAGCCTTCCGGCGGAAGGAGCACCTAACGAAGCACAGTAGAACCCACACAGGTACAGACCGTAGTGCCCACCACGACCAAGACCTTAGTAACCACCAAGACCCTACCACCCCCCAAGACCATAATAGTATGATTAGAACGACCAAGACTATCGGCGTCCAAACCCAAACTTCCCCAGTCCACCAGCCCCTCATCATATTGCCCACAGACCCCCCTTCCGTTCTCATTTTCGAGGCTGCTCTATCAAACCAGTCTGAAATTGCTAAATATGAGCTCAAAACTGAGTAG
Protein Sequence: MRAESPILPAPNYCGTDFTQPAALIGVGTMGDVKAELTTAHALKVSMTPEELNSIFCHEVFGSLKGGHQCTVCGRVFPYRYQLMVHARYHTLPEENGGGIVEGDVVAAAAAVAKEWNGHALVEALPQAAIAGTATAVVATAAAPAPTPTATTANGTQKNHICTQCGRGFSRKEHLANHMNRHTGQNPHECHLCPKKFSRKDHLDSHLRAHEADFKCHVCMKVFSRKEHLIAHVQWHTGSSPHRCHLCRKTFTRREHLVAHVRQHTGESPHICRFCAKSFTRREHVINHERGHTGESPHVCRFCAKSFTRREHVINHERGHTGETPFKCNLCPKAFARRDHLVNHTRQHTGETPWRCVECGKAFTRKEHLTNHVRTHTGETPWSCLECGKAFRRKEHLTIHTRTHTGETPWSCNECGKAFRRKEHLTIHTRIHTGETPWSCTECGKAFRRKENLTIHARIHTGETPWSCTECGKAFRRKETLIIHTRIHTGETPWSCGECGKAFRRKEHLTIHARIHTGETPWSCNVCGKAFKRKETLTIHARIHTGETPWRCGECGKAFRRKEHLTKHSRTHTGTDRSAHHDQDLSNHQDPTTPQDHNSMIRTTKTIGVQTQTSPVHQPLIILPTDPPSVLIFEAALSNQSEIAKYELKTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01365766;
90% Identity: iTF_00930589;
80% Identity: iTF_00930589;