Basic Information

Insect: Lygus lineolaris
Gene Symbol: -
Assembly: GCA_030264115.1
Location: JAEMON010000012.1:9490801-9510399[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.3 7.2e+03 -2.1 0.1 18 26 69 77 66 83 0.85

2 15 0.61 8.3e+02 0.9 3.3 15 38 158 182 151 188 0.82

3 15 0.04 55 4.7 1.4 18 38 189 210 181 210 0.82

4 15 6.3 8.6e+03 -2.3 11.6 17 30 214 237 205 265 0.65

5 15 0.045 61 4.5 0.8 17 29 270 282 259 294 0.75

6 15 0.035 48 4.9 0.4 18 29 299 310 284 322 0.84

7 15 0.017 23 5.9 0.3 14 36 323 346 311 349 0.74

8 15 0.0015 2.1 9.2 1.7 6 38 344 376 339 377 0.81

9 15 0.034 46 4.9 0.9 6 32 372 398 371 404 0.78

10 15 0.015 21 6.0 0.8 13 31 406 425 396 432 0.77

11 15 0.048 66 4.4 0.7 12 30 433 452 422 460 0.75

12 15 0.064 87 4.0 0.2 6 29 456 478 452 486 0.81

13 15 0.035 47 4.9 0.3 13 32 490 510 483 517 0.77

14 15 0.00039 0.53 11.1 0.4 6 30 512 536 511 544 0.79

15 15 0.0031 4.3 8.2 1.7 6 38 540 572 538 581 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.3	7.2e+03	-2.1	0.1	18	26	69	77	66	83	0.85
2	15	0.61	8.3e+02	0.9	3.3	15	38	158	182	151	188	0.82
3	15	0.04	55	4.7	1.4	18	38	189	210	181	210	0.82
4	15	6.3	8.6e+03	-2.3	11.6	17	30	214	237	205	265	0.65
5	15	0.045	61	4.5	0.8	17	29	270	282	259	294	0.75
6	15	0.035	48	4.9	0.4	18	29	299	310	284	322	0.84
7	15	0.017	23	5.9	0.3	14	36	323	346	311	349	0.74
8	15	0.0015	2.1	9.2	1.7	6	38	344	376	339	377	0.81
9	15	0.034	46	4.9	0.9	6	32	372	398	371	404	0.78
10	15	0.015	21	6.0	0.8	13	31	406	425	396	432	0.77
11	15	0.048	66	4.4	0.7	12	30	433	452	422	460	0.75
12	15	0.064	87	4.0	0.2	6	29	456	478	452	486	0.81
13	15	0.035	47	4.9	0.3	13	32	490	510	483	517	0.77
14	15	0.00039	0.53	11.1	0.4	6	30	512	536	511	544	0.79
15	15	0.0031	4.3	8.2	1.7	6	38	540	572	538	581	0.78

Sequence Information

Coding Sequence: ATGAGAGCAGAGTCGCCGATACTCCCGGCCCCGAAcTACTGCGGGACTGATTTTACTCAACCTGCTGCTCTGATTGGCGTGGGAACTATGGGTGACGTCAAGGCCGAACTCACAACTGCGCATGCTCTCAAAGTCAGCATGACGCCAGAAGAGCTGAATTCTATATTCTGCCACGAAGTTTTTGGCTCCCTGAAAGGAGGACATCAGTGCACTGTTTGTGGCAGGGTGTTCCCTTACCGTTATCAACTGATGGTTCACGCACGATACCACACGCTTCCCGAAGAAAATGGCGGAGGTATCGTAGAAGGTGACGTGGTAGCCGCTGCCGCTGCAGTTGCCAAGGAGTGGAACGGTCATGCACTTGTGGAAGCTCTGCCACAAGCCGCCATTGCTGGAACAGCCACAGCAGTCGTGGCAACGGCTGCAGCTCCTGCCCCAACACCCACAGCTACTACTGCAAACGGTACGCAAAAGAATCATATTTGCACTCAGTGCGGACGAGGGTTTTCTCGCAAGGAGCATCTCGCCAATCACATGAACAGACACACAGGTCAAAACCCACACGAGTGCCATTTGTGCCCGAAGAAGTTCTCACGAAAGGACCATCTGGACTCGCACCTCAGGGCCCACGAGGCGGACTTCAAATGTCACGTTTGCATGAAAGTGTTCAGTCGTAAAGAGCACCTCATCGCTCACGTGCAGTGGCACACCGGATCCTCCCCTCATCGGTGTCATCTTTGCCGGAAGACCTTCACCAGGCGGGAGCATCTGGTGGCTCACGTCCGTCAGCACACTGGAGAGTCTCCCCACATTTGCCGGTTCTGCGCTAAGTCCTTCACAAGGCGGGAGCATGTCATCAACCACGAACGGGGGCATACGGgTGAATCTCCGCACGTTTGCCGATTCTGCGCCAAGTCCTTCACTAGGAGGGAACACGTCATTAACCACGAGCGTGGGCATACAGGTGAGACGCCGTTCAAGTGTAACCTCTGCCCCAAAGCTTTCGCCAGGCGCGACCACCTGGTCAACCATACTCGTCAACATACAGGTGAGACCCCGTGGAGGTGCGTGGAGTGTGGGAAGGCCTTCACGAGGAAGGAACACCTCACCAATCACGTCCGGACTCACACAGGGGAAACGCCATGGAGTTGCCTCGAGTGCGGGAAGGCGTTCAGGAGGAAGGAACATCTCACCATTCACACTCGGACTCACACAGGGGAAACACCATGGAGTTGCAACGAGTGCGGGAAGGCATTCAGGAGGAAGGAACATCTCACCATTCACACTCGGATACACACAGGAGAGACGCCATGGAGCTGCACTGAGTGTGGAAAAGCATTCAGGAGGAAGGAAAACCTCACCATACATGCCCGAATCCACACAGGGGAGACGCCATGGAGTTGCACCGAGTGTGGAAAGGCGTTCAGGAGGAAAGAAACCCTCATCATTCATACTCGGATTCACACAGGAGAAACTCCATGGAGTTGCGGCGAATGCGGAAAGGCCTTTAGGAGGAAGGAGCACCTGACTATCCATGCACGAATTCATACTGGGGAGACACCGTGGAGTTGCAACGTTTGTGGGAAGGCGTTCAAGAGGAAAGAAACCCTCACTATACACGCTCGGATTCACACAGGAGAGACGCCCTGGCGTTGCGGGGAGTGCGGGAAAGCCTTCCGGCGGAAGGAGCACCTAACGAAGCACAGTAGAACCCACACAGGTACAGACCGTAGTGCCCACCACGACCAAGACCTTAGTAACCACCAAGACCCTACCACCCCCCAAGACCATAATAGTATGATTAGAACGACCAAGACTATCGGCGTCCAAACCCAAACTTCCCCAGTCCACCAGCCCCTCATCATATTGCCCACAGACCCCCCTTCCGTTCTCATTTTCGAGGCTGCTCTATCAAACCAGTCTGAAATTGCTAAATATGAGCTCAAAACTGAGTAG
Protein Sequence: MRAESPILPAPNYCGTDFTQPAALIGVGTMGDVKAELTTAHALKVSMTPEELNSIFCHEVFGSLKGGHQCTVCGRVFPYRYQLMVHARYHTLPEENGGGIVEGDVVAAAAAVAKEWNGHALVEALPQAAIAGTATAVVATAAAPAPTPTATTANGTQKNHICTQCGRGFSRKEHLANHMNRHTGQNPHECHLCPKKFSRKDHLDSHLRAHEADFKCHVCMKVFSRKEHLIAHVQWHTGSSPHRCHLCRKTFTRREHLVAHVRQHTGESPHICRFCAKSFTRREHVINHERGHTGESPHVCRFCAKSFTRREHVINHERGHTGETPFKCNLCPKAFARRDHLVNHTRQHTGETPWRCVECGKAFTRKEHLTNHVRTHTGETPWSCLECGKAFRRKEHLTIHTRTHTGETPWSCNECGKAFRRKEHLTIHTRIHTGETPWSCTECGKAFRRKENLTIHARIHTGETPWSCTECGKAFRRKETLIIHTRIHTGETPWSCGECGKAFRRKEHLTIHARIHTGETPWSCNVCGKAFKRKETLTIHARIHTGETPWRCGECGKAFRRKEHLTKHSRTHTGTDRSAHHDQDLSNHQDPTTPQDHNSMIRTTKTIGVQTQTSPVHQPLIILPTDPPSVLIFEAALSNQSEIAKYELKTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01365766;
90% Identity: iTF_00930592;
80% Identity: iTF_00930592;