Llin021622.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- SPOPL
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000010.1:21151973-21153451[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.7e-27 8.8e-25 87.8 0.3 3 109 17 122 15 123 0.94 2 4 0.056 13 6.7 0.0 76 109 121 154 119 155 0.91 3 4 4.4e-16 1.1e-13 52.1 0.0 6 109 330 427 325 428 0.91 4 4 4.6 1.1e+03 0.6 0.0 77 106 427 456 424 459 0.87
Sequence Information
- Coding Sequence
- ATGTTGTGCGAAGTTGACTGCTTCGGCGTCATGTTCAGCAGGATGCATGGTTTCATGAAGAAAGGTGCGTTCACTGATGTGACGTTCGTTGTTCAAGGAGGATCGAAAATAAGAGCTCACAAAAGTGTTTTAGCTGCCTGCAGCACTGTGTTTGAGGTAATGTTTCAATCTTCATTGATCGAAGGGCGAAGGAACGAAATTGAGATAAATGACGTCAATCAAGAAGTGTTATCCGCTTTTCTGGACTACGTTTACCTCCGAGATGCGAAAATTGTTAAGAAGCACGTTAACCAACTACTCATGATGGCAGATAAGTATAACGTAGAGAGTCTAGCGCTGTTGTGCGACGGCTTCATTGAAGCATCACTGACGTCCGAGAACGCTGTGGATTCCTTGCTTTTGGCAGACCTTTACAGGCGCGACGATCTCAAAACGAAAATTGGACGTTTCATCAAGAAAAATTTGGAGACCATCAGCACGCACCCCGGATGGGCTAAATTGGGAGACAATTTTGAGGTGATCAACGGGCTCATACATTCCTTCATACAAACGGAAGACCTAAAAGTATGTTCGAAGTTATCTAATTCTGTTACCTGGACTCTACGGAATGTCAACGATTGGTACAAGAAGTCAGAAATTATGCCGTGGGAGGCATTGACCTTTGTCGATGTTgatccaaaaattgttttcaacgtAACATTGACATGCTTCGACTATCAAATCGCGGTACAtatcaaagttgaaaacaaGCTTAGTGAAGAGTTTTCTTCAGTCTTCGTGATAAGAAGACGCAGCATTACCGGAGTTGATGCTCAAACGAACATTCGTTTATCTTGGGCACCGAAGACGTCTGAAGCCCAAATTTATGTTCCATGGGACTATAAAAAGGAACAGCGCTACTGTTTGGAATACCCTCTGTTTATAACTGTGGTTGTTCAAAAATCAGACCTTTCTGATCGGTATCAATTGGTTGAACATTTTTCTGAGCGGAATTCAAGATTCGCAGACGCTGAAATATTAACTGGAAACGGCCTCAAGTTTCAGGTTCACAAGTTGGTCCTTTCTAACAATAGTGAATTCTTCTCTGAGCGGTTGAAAGAGGACCAAAAACAGTATACAATTTTGGGGATGGACGGAAAAACTATCAATCGTCTCTTGGACTACATGTACAGCCTTACTAATCCGAGTCCAGGAATAGTCGATTTGAGTTTGCTGAAAGGAGCTAAACAATTTCAACTCGATCATTTGGTCGAATACTGTGTTTCAGTCCTTCAAAACAACATCAGGCACGATAACGTCGTGGAAATTTGCACGACGGGGGAAGAATTGGGTTTGGAAGGGCTCGTCTCCAAGGCTATGGATTTCATGGGGAAAAATCCTTATAGAACCATGATTTCGGTCAAATGGTCGACTTTGAAGCATCATCCAAGACTTACCAAGGATCTGCTCTTCAAACTTAAGAATTCTTCCCAAAGTTAA
- Protein Sequence
- MLCEVDCFGVMFSRMHGFMKKGAFTDVTFVVQGGSKIRAHKSVLAACSTVFEVMFQSSLIEGRRNEIEINDVNQEVLSAFLDYVYLRDAKIVKKHVNQLLMMADKYNVESLALLCDGFIEASLTSENAVDSLLLADLYRRDDLKTKIGRFIKKNLETISTHPGWAKLGDNFEVINGLIHSFIQTEDLKVCSKLSNSVTWTLRNVNDWYKKSEIMPWEALTFVDVDPKIVFNVTLTCFDYQIAVHIKVENKLSEEFSSVFVIRRRSITGVDAQTNIRLSWAPKTSEAQIYVPWDYKKEQRYCLEYPLFITVVVQKSDLSDRYQLVEHFSERNSRFADAEILTGNGLKFQVHKLVLSNNSEFFSERLKEDQKQYTILGMDGKTINRLLDYMYSLTNPSPGIVDLSLLKGAKQFQLDHLVEYCVSVLQNNIRHDNVVEICTTGEELGLEGLVSKAMDFMGKNPYRTMISVKWSTLKHHPRLTKDLLFKLKNSSQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -