Llin010641.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lygus lineolaris
Gene Symbol
Hr39
Assembly
GCA_030264115.1
Location
JAEMON010000004.1:2648042-2681614[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 0.014 2.3e+02 1.8 3.6 48 174 90 227 64 238 0.79
2 3 8.9e-10 1.4e-05 25.5 0.1 1 34 347 382 347 415 0.75
3 3 4.6e-69 7.3e-65 220.8 0.2 204 408 424 623 379 623 0.88

Sequence Information

Coding Sequence
ATGATTTCTTGCGAGAGCTCACGACGAGCCAATCAGCAACGCTCCTGTTTCGAAGTTGACTCATTAGTCGGACATTGTTCAAGTGGTAAATGTTCCGTGGTCGTCAGCAACGAGCAGATGAACGTCGATGAAGATTCTACTGCAGCTGATGCTGAAGTCAGCACCTTCACCAGTGAACCAGTTAACTTGCGGAATAAGAATAGAGATGAGTCGAGAACTTCTATCGAGAGGCCCATGTCCTGGGAAGGGGAACTCTCCGATTCTGAGTGTGCGACAATCAAACCTaatgaaaaagtaGTGGACCAAGCGAGGACAAATCAATTAAACGCTCAGTCTGAACTTTTGGTAGATAAGCTTTTAAGTAGCGGTGGTGTACTGAAAGGGCCCGGACCTACACCAAGCCCAGACTCGGCCGTCTACTCGTGTTACTCTCCCACCGCCAGCCCCGTCACGTCGAGGCACATCCTCTCCTCGTCGTCGGGCATCTCCAGTCCCTTCACGCCGTCGCTCTCTCGGAATAACAGCGATGCCTCGCAATATGGAGGCTCTCAGCACTCGAGCTGCTACAGCCATAGCTATTCTTCGGTATCCGTTTCTCCCACGCAATTTTCTCCCACCCACTCGCCGATCCAAGGAAGGCACATGCACAGGCCTGGTTTCCCTTCGCCAGTTCTCAACAATAGAGGCCTCCATGAATTCTCAATGCCGAACGATGAAGGTAATAGCAACGCCTTGGAAGAAAAATTCGCGTCGATGGCAGCCGATTTCGTTCAGCACAATGTGGGACTGGCGTCTCCAGGAATCAGTCGGCAGCAACTTATCAATAGTCCTTGTCCGATCTGCGGGGACAAGATCTCGGGTTTCCACTACGGCATTTTCTCCTGCGAGAGCTGCAAAGGGTTCTTCAAAAGGACCGTGCAGAACCGCAAGAACTACGTCTGCCTCCGAGGATCCTCCTGTCCTGTCACCATTGCAACCAGGAAAAAGTGTCCGGCTTGCAGGTTCGAGAAATGTCTCAGCATGGGCATGAAACTCGAAGCCATCCGGGAAGACAGAACGCGGGGTGGCCGAAGTACTTACCAGTGCTCGTACACAGTTCCGGCGGGTCTCGTGGAACAGAAGTGCGCGGAGCTTCAACAGCAGCAGCAATCCGCTCCACAAACCAACCTCGTCCCTCAACTTCTGCAGgaAATTATGGAGGTTGAACACCTCTGGCAGTACAACGAAGCCGACCCCAAGTACGTAGGCAGGATACCAAGACCCTCTGCACCCCAGCCTACGGATCTCATGGCCAATTTATGTAACATTGCCGACCATAGACTTTACAAGATAGTCAAGTGGTGTAAGTCGCTCCCACTCTTCAAAAACATTTCGATCGACGATCAAACCTCCCTCCTCATCAACGCCTGGTGCGAGCTCCTCCTGTTTTCCTGCTGTTTCCGCTCGATGTCGTCTCCCGGGGAGATCCGCGTGTCTCTGGGGAAGTGCATCACACTCGTCGAAGCCAAGAACTTGGGCCTCGCTCAGCCCATTGAGCGAATGCTCAACTTCACCGATCACCTGAGGAGGCTGAAAGTCGATAAATACGAATACGTTGCCATGAAAGTCATCGTCCTTCTGTCTTCTGACACAAGTGACTTGCGAGAGCCGGATAAGGTGCGGGCGAGTCAGGAAAAAGCGCTCCAAGCTCTGCAGCAGTACACTCTGGCCCACTACCCTGACATTCCGTCCAAGTTCGGCGAGCTTCTCCTCAGGATACCGGATCTTCAACGAACTTGCCAGATTGGGAAAGAGATGCTGTCTATCAAGAGCAACGAAGGTGAAGGGCCAAGCTTTAACCTTCTCATGGAGTTATTGAGAGGAGATCACTAA
Protein Sequence
MISCESSRRANQQRSCFEVDSLVGHCSSGKCSVVVSNEQMNVDEDSTAADAEVSTFTSEPVNLRNKNRDESRTSIERPMSWEGELSDSECATIKPNEKVVDQARTNQLNAQSELLVDKLLSSGGVLKGPGPTPSPDSAVYSCYSPTASPVTSRHILSSSSGISSPFTPSLSRNNSDASQYGGSQHSSCYSHSYSSVSVSPTQFSPTHSPIQGRHMHRPGFPSPVLNNRGLHEFSMPNDEGNSNALEEKFASMAADFVQHNVGLASPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGSSCPVTIATRKKCPACRFEKCLSMGMKLEAIREDRTRGGRSTYQCSYTVPAGLVEQKCAELQQQQQSAPQTNLVPQLLQEIMEVEHLWQYNEADPKYVGRIPRPSAPQPTDLMANLCNIADHRLYKIVKWCKSLPLFKNISIDDQTSLLINAWCELLLFSCCFRSMSSPGEIRVSLGKCITLVEAKNLGLAQPIERMLNFTDHLRRLKVDKYEYVAMKVIVLLSSDTSDLREPDKVRASQEKALQALQQYTLAHYPDIPSKFGELLLRIPDLQRTCQIGKEMLSIKSNEGEGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00373210;
90% Identity
iTF_00145616;
80% Identity
iTF_00930438;