Llin027350.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lygus lineolaris
Gene Symbol
egg
Assembly
GCA_030264115.1
Location
JAEMON010000015.1:13680384-13684483[-]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 4.6 2.4e+04 -4.2 0.1 34 48 169 183 169 186 0.81
2 2 1.4e-11 7.3e-08 32.7 0.0 29 73 706 748 691 751 0.88

Sequence Information

Coding Sequence
ATGGCTCTTGTCCCAGAAGTCATTGTTTTAGACGACTCTGAAAGTGAAGATGAGGCTCACAAAAGTTCGACTAACCTTGTTCCAGAGAAATCCGAGGTAGAGGTGCGATCACCAGCAATTCCTTCAACTTTGAGTGCTGGGCAAAGTAGAAATGATGTTGGTAATACTTCTTCAGTTCAAAACTCAGTCGTTGGTGCGACTGCTGCATTAACCTTCTCAGGAGGTGGTACTAATGCTGCGTCAATCAACTCAGGAGTTGGTACTAATGGCGTCCCTACCTCAAGAGAACCTGAAATAATTGAGATTGACATTACTGACAAAGACTCTCCCGAGGATCTTGAGCAGACTGCTGTTGATACTCTTGATTGTCAAGGAATGCTCGAGAATATCTCCAAAAACACTGAGCAACCGCATGTTCCATGCCGAAACAAAAAAGGTCCTGTGTGTTGCAACTCGTGGTGCGACCGTCCTGCATCTATAATGCCTGCAGAAAACATACGCGATTACTATAAAATACCTCCGGGGAAGTCTTTCAAGCTGTGCAATGACTGTGTGGAATCTTACTACATTTATGTGGAGAAGGCTCTGAAGAATCTGGAAACAAATGGGAACATGCTTGAGGGGCGATGTACACATGACAATGAATTCATTATTCTGGATAATGAATCTGATGAATCTGATGACGCTTCAGACCCAGAAATGGAAAAACTGCTTGGAGATGTGATCAAAGAAAGCATCAAAGAAATCGATCAGCAGTTCAACTTCACTGGAATTTTCAATAGTGCCAAGGATCTggttattgaaaaattcgagaaatttGCTATTGATGGAATCGAGTTGGCTCAAAATGTATCCAAAATAGAAACTGACCTCTACAAAAGTACGGAAGAATTCAAAAGAACGTTCAAGAATGAAAAAACAGTTGTCATGGCAGAACTGGATATGCCACTTGGTACTGGCAtggatcaaaaatcaaaacgaGGAAGAAGTAGTGGGGAACAAAATAGTGAAACGGAACCGTTCGGGTTGCCTCCATTTGGCGAATTAATCAGACCTCCACCCAAAGTTGGTGATTTGGTGTACGCTATGaaagaatacaatttttcagaATGGATCCCATTTAAAGTCACAGACGTCATCTATGATTCAGATGAGCATGGAAACTTCATTGAAACATTCAGCTTACAAACGATAGTAAACAACGTTGTGCTGAAAAGAGTCGTGAATGGTGACCACGTGGCTTATAGCAATGTTCCTACTGTTCGGCTGGGTATAGGTAGCCGTATAATTGGTGCTTACAACCAAAATACGAGTGGTAAGCAGCCAATAATGTTTTTGTCTGGTATGATTGCCGAACTTCCCACTCATGTAAATCAATTCCgttatttagtgttttttgacaATGGTAAGGCACAATATTGCCCTCATGGCGATTTAAAAGTTGTTTACAAGCCAACTAAGAAAATTCACGAGTACTTCATCGGGTTCCATTCCAACTTTGTGCAACAGTATTTGAACAACTTTCCTGAGAGGCCCATGGTCAAAACCAATACTGAACATTTTGTTAGGGTCGAGCTGAATGGATTTTGGATCAGCGGTAAAGTAGATAGGCTTGATGGGTCACTTGCTCGGGTGACGTTTCTCAATGATAATCACTCTGAATGGATTTACCGTGGTTCGCCCCGGCTTCGTCCAGTTTATGAAAGGTTACAAGCCAATCTTCGTAATGGTGGCAGCACTTCTATTCCTTCTGTGCAACAAATGACTCGCCGCACTGCTCCTCAACATTCAAAGCAACTCAAACCTGGAATGGAGATAGTTATTGACAGCAGTGACGACGATGAGGACAGCAATTCCTCAAACAGTGTCAGGGCTGTTGCTAAGAAAAGTACTTCCCGCCAAATGCAGGCTCTGTCGGTGGCTCAACCTCAGAAACGAGTCACGAGATCATGTGTTATTCGTAGATTGCCATCTATGATGCTGAATCCTAACTCGTTCCATTACCACAAGTGTTCACGAGCCTGCGTCACATGGGTCAAATATTCTGAAGATAAAACTCTTGGGGCCAACCCACTGGCCATTCCTGCAATTTTTGCGTTCAGAAGAGAAATTGATGTCACCAGTGCTGTGACGTATACAGCACCGTGTGGTAAGAGGTTGAAAAACATCCAAGAAGTCCTCAAATATTTGTCAGAGACACTCATACCCTTAACATTGGACATGTTTGACTTTGATATCAGAACTCAAATATTTGATGAGTATGTTGTGGCATCTCATTTCATGATCATGGAAGATATCAGTTTTGGAGCTGAAAGGAATCCAGTTGCCTGTGTCAATGAGGTGGACACTGATTGCCCTGACTTGATGCAGTACATGACAGAGAGGCGGCCTCTTGAAGGTGTAAGTATGAATTTGGACCCTGACTTTCTTGTGTGCTGTGACTGTGAGGACAACTGCCGGGATCGCTCAAAATGTCGGTGCTGGAGACTCACGATAGATAACTTCAAACCATTCAACCAAGGTGAAAATAAACGCCATATCACTAAAATTGGTTATCAATACCAACGACTAGATCAAAATCTGTTGTCTGGTATTTACGAATGTAACAGTCGGTGTCATTGTAACACTGTAACGTGTATAAATCGGGTTGTTCAACACCGCACTAGGCATAAGTTGCAGTTGTTCAAAACATCCAAGAAAGGTTGGGGAACAAGGTGTCTAAATGATATTCCTCAAGGGGTTTTCATCAGCACATATGTGGGGAATATATTGACTGAACCATCAGCCAATGAAACTGGTACAATCAATGGCGATGAGTATTTTGCGGAGTTGGACCATATTGAAGTAATGGAAGAACACAAAGCTGACTTTGAAGCGCAAGCTTTGAAGATGACggatgatgaagatgaagagaGTGAAGAGGAAACCATTACTCGCACAACTTCGTCTTCTGGTAGAGCATTGCGCTCAAGTGCTCATGGGAAGCGTAAACGCAACTCTGGGGGTAACACGCCTGCTAAGCCTGGATCACGTAAGACAACAAGTGTCGATGAAGCTCCAGTCCTAGTAAACAATAgcgaagacgaagaagaagatgacGGTGATTCTGTGAGAAAGTACTACGGTCCCAATGAAACAGTTTATGTCATGGACGCCAAAATAGCAGGGAACATTGGTAGATACTTCAATCACTCGTGTAACCCAAACATCTTTGTCCAGAACGTCTATGTGGATACTCACGATTTACGGTTTCCGTGGGTGGCATTTTTTGCCCTGAGACACATCCCAGCTGGCTCTGAACTCACTTGGGACTATGGCTACAAGATTGGCAGCGTCCCTGGCAAGGTCCTCTACTGCTACTGCGGCTCTCACAACTGCCGAAAACGACTGCTGTAG
Protein Sequence
MALVPEVIVLDDSESEDEAHKSSTNLVPEKSEVEVRSPAIPSTLSAGQSRNDVGNTSSVQNSVVGATAALTFSGGGTNAASINSGVGTNGVPTSREPEIIEIDITDKDSPEDLEQTAVDTLDCQGMLENISKNTEQPHVPCRNKKGPVCCNSWCDRPASIMPAENIRDYYKIPPGKSFKLCNDCVESYYIYVEKALKNLETNGNMLEGRCTHDNEFIILDNESDESDDASDPEMEKLLGDVIKESIKEIDQQFNFTGIFNSAKDLVIEKFEKFAIDGIELAQNVSKIETDLYKSTEEFKRTFKNEKTVVMAELDMPLGTGMDQKSKRGRSSGEQNSETEPFGLPPFGELIRPPPKVGDLVYAMKEYNFSEWIPFKVTDVIYDSDEHGNFIETFSLQTIVNNVVLKRVVNGDHVAYSNVPTVRLGIGSRIIGAYNQNTSGKQPIMFLSGMIAELPTHVNQFRYLVFFDNGKAQYCPHGDLKVVYKPTKKIHEYFIGFHSNFVQQYLNNFPERPMVKTNTEHFVRVELNGFWISGKVDRLDGSLARVTFLNDNHSEWIYRGSPRLRPVYERLQANLRNGGSTSIPSVQQMTRRTAPQHSKQLKPGMEIVIDSSDDDEDSNSSNSVRAVAKKSTSRQMQALSVAQPQKRVTRSCVIRRLPSMMLNPNSFHYHKCSRACVTWVKYSEDKTLGANPLAIPAIFAFRREIDVTSAVTYTAPCGKRLKNIQEVLKYLSETLIPLTLDMFDFDIRTQIFDEYVVASHFMIMEDISFGAERNPVACVNEVDTDCPDLMQYMTERRPLEGVSMNLDPDFLVCCDCEDNCRDRSKCRCWRLTIDNFKPFNQGENKRHITKIGYQYQRLDQNLLSGIYECNSRCHCNTVTCINRVVQHRTRHKLQLFKTSKKGWGTRCLNDIPQGVFISTYVGNILTEPSANETGTINGDEYFAELDHIEVMEEHKADFEAQALKMTDDEDEESEEETITRTTSSSGRALRSSAHGKRKRNSGGNTPAKPGSRKTTSVDEAPVLVNNSEDEEEDDGDSVRKYYGPNETVYVMDAKIAGNIGRYFNHSCNPNIFVQNVYVDTHDLRFPWVAFFALRHIPAGSELTWDYGYKIGSVPGKVLYCYCGSHNCRKRLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00145592;
90% Identity
-
80% Identity
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