Llin022590.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- ING2
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000011.1:7193042-7193926[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-17 1.5e-13 51.0 0.1 9 72 56 124 50 129 0.92 2 2 0.92 4.8e+03 -2.0 0.0 14 32 129 147 123 148 0.73
Sequence Information
- Coding Sequence
- ATGGACGCTCTAGATTTGGATCATCAGTCAAACAACAATAACTCCAGCGACCAAAGTCCCAAAAAAGGCGTATTCccgaaaattcggaaaaaaattttcaagacAACCCAAGGTAATGATTTCAGAGGCGAAAATGTGCCTGACTGGGCTAGAAAACTTTACCTGGAACCGCTTTTGGAGGGCTGGCGTCGAGAAATCGTCACTAGATCTACTCCTTCATCGCGTTCAACCGGAAATGTACCAAATGTTGATGTGTACTACTGGCCTCCAGAAGGGAGGAAACTTAGGTCTCGACCCGAAATTGCCGAATATTTACAAGTAAATGGTATCACAAAGTTTTCAGCAGTGtttaattttagtttcaaaaagcAAGCATTAGGGGAGGAATTTGAGCCTTACGAAGTAATAAGAAATGCTGGGGCTAAGCGTGGGCGCCCATGCGTGGGAGATAATTCACACACCCATGCACTGCAGTCTTCTTTGAAACAAAGCCAGAACAGAATTGgtgttaaaaagaaaaatgtaacaaaacatATTGAACCAAAGTTTGGGCCTATCTTGCTAACTGGTGACGATATATCCCCTGAAAAACCAGAATTATCAACTCCGATTCAACACTCTTCTATCAAGAAACAGAAACTATCTTATAAACCATCAGAAGAAGATGGAACTACCCCTGAAGATAAGTTGTATTGTATTTGTAATGATGTGGAGAAGGGACAAATGATATTATGTGACAACGTCAACTGCGAGATCGGCTGGTATCATTTTGAATGTGTTAGGTTATGTGAAGAGGAGCCAAAGGGATCCTGGTACTGCCCTATTTGCAGAGGTCCCACTTCTGATGAGATGAACCCATCATACATCAGGGATAAAGAAAGGtga
- Protein Sequence
- MDALDLDHQSNNNNSSDQSPKKGVFPKIRKKIFKTTQGNDFRGENVPDWARKLYLEPLLEGWRREIVTRSTPSSRSTGNVPNVDVYYWPPEGRKLRSRPEIAEYLQVNGITKFSAVFNFSFKKQALGEEFEPYEVIRNAGAKRGRPCVGDNSHTHALQSSLKQSQNRIGVKKKNVTKHIEPKFGPILLTGDDISPEKPELSTPIQHSSIKKQKLSYKPSEEDGTTPEDKLYCICNDVEKGQMILCDNVNCEIGWYHFECVRLCEEEPKGSWYCPICRGPTSDEMNPSYIRDKER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -