Llin019795.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- lov
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000009.1:17941229-17958248[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.2e-18 4.7e-15 55.8 0.0 1 44 380 423 380 424 0.96
Sequence Information
- Coding Sequence
- ATGAGTTCCCCGCACTACAGCCTCCGCTGGAACAACCACCAGAGTCACCTCCTCACGGCCTTCGACTCGCTGCTCCAGAACGAGACCCTCGTCGACGTGACGCTTGTCTGCGAAGAGTCGAGCTTCAAGGCGCACAAGGTCGTCCTCTCTGCCTGCAGCCCatatttccaacggattttctCCGAAACGCCGTGCAAGCACCCAGTAATAGTACTGAAAGACCTACGAGGATGGGAAGTACAAGCCATCGTGGACTTCATGTACCGGGGAGAAATCAGTGTAGGTCAAGAACAACTCAGCTCCTTGATAAAAGCTGCTGAATCTTTACAGGTGCGGGGGTTGGCTCACACGGAGCGGATCCCCGTGCTGAGCACCGAGAAGACGACGAGCCACCCGAGGGAGCGCTGCTTCTCGCCCACGACGCCGCCGCACCACCAGTTCAACGGTCCGCAGGGCGGCGCCCCTCATTCCATGCGGCTCCCGCAGATCCCCCACCTCCCCAACATCTCCTTCAGCGAAATGCCGGAGCGGCACTGCACTTCGCCGATGCCCCGCCGGAAACAGGCGAGGCCAAGGAGGCGATCGGGCGACACCAGCGGGCCCCAGGACCTGACCAAGACCCCCAACTCACCACCCAGATTATCAGATATGGCGGAAAACCTCTCgctgaagaaaaatatcaacaataataacaacagcaacaacaacaataacaacccGCCTTCCCGTCAGAACTCAACGCCCACGCCGCCAGGAGTGAATATGAAGATGGAAAGCGAAGACTCCAACCCACCCGATTCGAGTCAGGCGCATCCCGTCGAACTGACCACAACACCTCAGGAACAGAGGATGGAGTACAACACAGACCACCTGAATCTTCCCACTCCTCATCACGATTCCTCACTGGAAAATTCGTTCCCACATCTGGCATCGATTTCGGCTCTATCTCTGACACCTCCTCATATGTTTTCGTTGGATTCTCAACTTGgGCTTTTTCCCGGTATGGAGAATTGCCGAAATCCACTGCTTGGCGACATGAATGAACCAAGACTTGAAAATCACATATCGAACAAGAAGAAAAtggGACGGCCTAAAGGACAACATAGTGCTCCAAGGGGCGGTCCACCTCGATCATGGACAAACGCCGAGCTCACAGAAGCTCTTCAACACGTGTGGAACAAAAAAATGACGACTTCCCAAGCTTCCAGGATATTTGGAATCCCTTATAACAGTCTGCTGATGTACGTGCGTGGGAAATACGGTAAATCCCTCAAGCTCGAGCAGCTGAAGAAAGAGTGTTTCGGGGAGCTCGGCTCACCTCTCGACCTCCTCGGGCTTGGTAACATCTCTAACAACAACAACCCAAGTGGGAACAAACCACCCAAAATGGAGCCGGAACATATGATGATCCCTCCTGGGTTCAACCCACCGTTTCCTCCAGTACCGACCAATTTCTACCCAGATTTCAGCACTGCCTACCCCGTTCCGGTGGGCATGGTACACCTGCTGCCACAGTCCGAAAAGAACCGAGAGCCGAGCAGCCAGGACGTTGTAGACTACACGAAAAGCGATTCAGAGTCCGAGCGACACCGCGCGACTCCGCTCGACTACGCCAAAGATGACTTGAGGAACAGTCCTATGGCCCTGGATTTCGTCAAAGAAGAGTCCAGCAGTCATCAGAACTGTTCCGATCTCATGGACGACGCTCGGGACGCGATGGGCAGCGGAGAGCGAAGCGATCAACGTGGTTCGCCCCGTGTGCCGCTTGGATCGCAATCATCAAGCTGCCAGCGTGAGATACCTGTAGGCCAAGCTCACAATGGCCAAGATTGA
- Protein Sequence
- MSSPHYSLRWNNHQSHLLTAFDSLLQNETLVDVTLVCEESSFKAHKVVLSACSPYFQRIFSETPCKHPVIVLKDLRGWEVQAIVDFMYRGEISVGQEQLSSLIKAAESLQVRGLAHTERIPVLSTEKTTSHPRERCFSPTTPPHHQFNGPQGGAPHSMRLPQIPHLPNISFSEMPERHCTSPMPRRKQARPRRRSGDTSGPQDLTKTPNSPPRLSDMAENLSLKKNINNNNNSNNNNNNPPSRQNSTPTPPGVNMKMESEDSNPPDSSQAHPVELTTTPQEQRMEYNTDHLNLPTPHHDSSLENSFPHLASISALSLTPPHMFSLDSQLGLFPGMENCRNPLLGDMNEPRLENHISNKKKMGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLKKECFGELGSPLDLLGLGNISNNNNPSGNKPPKMEPEHMMIPPGFNPPFPPVPTNFYPDFSTAYPVPVGMVHLLPQSEKNREPSSQDVVDYTKSDSESERHRATPLDYAKDDLRNSPMALDFVKEESSSHQNCSDLMDDARDAMGSGERSDQRGSPRVPLGSQSSSCQREIPVGQAHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00145469;
- 90% Identity
- iTF_00145469;
- 80% Identity
- iTF_00930488;