Llin016446.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- NFKB2_1
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000007.1:12798795-12831275[+]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.056 4.4e+02 1.5 0.0 68 102 107 142 98 152 0.87 2 2 1.8e-15 1.4e-11 45.4 0.0 1 169 159 351 159 351 0.79
Sequence Information
- Coding Sequence
- ATGGCCTACCAAAGAGGACAGCGATCTTCTGCCGTTACTCTTGAGACCAATGTCAGCATAGCCTGGGCTTCCCCTAGCCCACGTCTATCTGATGAGGTGGAAGGCGATGGAAAAGAACAGGGCTATTCAGATGACGAACACTCCTACTCGCGACCAGAAAACTCTGAACTACACCCCAATGGGAACCACAAGCGGCGGAAGAGGATTCACGAAAGCCAGACAACCTCAAGCGACGACGTGGAGAACAGTCAGGAGCAGTGGCGGTCAGGCAGCTCGCCTATCAGAGAAGGGAGTCGGTCGGAAGATTCAGATGATTCAACAGCTCTCGTCATCAAGTGTGAACCTGAGGATGACCTCTGTAATATTGAAGATGGCGATGAACAGCTTGTGTCTACATACGAAATGTTGGGAAACCACCATGTGAAGGTAGAAGCTGACCCAATAGCTTtagaagaagTTTTAGAACAGCCATACCTAGAAATCTTAGACCAGCCAGAATCTTCCTACAGGTTTCGATATAAACGGGAGAGCAGTAAACCTCATGGTCCTCTGAAAGGGCGTTTACATGTTGACCGAGGAAGGAACAATTCAGCGTATGGGCCGCGAGTGAAGcTCTGCAACTTCTATGGAGAAGAGGCTATTTTACGGGTATGGCTGTTTTGCGGGGCAGAACCGTCACCTCATCAGCTAGTTTCAACTGCAAAGGTGCCATCTTTGAATGGGCCATCAGAAGAGGTGTTGCAGTATGAGCCCCACCAAGTCATAGTCTCTGGCGAAAATAACTACACTGTCTCGTTCAGCAAACTAAATATACTTCATGTGGTTTGTGGCGATCTTGACTACCAGAAGAGGTATTACATCAAGAAGCATTTTTCATTGAGCAATAGCTTTATCCCACCTACGAACTTGCCACCTTTTGACCCAGTCAGTATGAAAGAAGAAATCAAACGGAAAGAAAAAGACATCGCTTGTTTATTCATCGAAGCATTTGAAAAGACTGACAAAGGTTACAGAAAACTCTGTGacattatttcagaaaatataaaaaacaaaaAAAGCCCTAAAACCAATGACCTGAAGATCTTGAAACAAAGTCACGAAGAAGGCTCTTGTCGTGGGAATCAACAAGTTCTCATTTTTACAGAAAAACTTATCAAAGACGTATCTGTTGAATtcttcgaagaagatgaagatggTGAAATCACATGGAGTAGCAAAGCGTCCTTCAAAGAAAGCGACATCCACAAACAAGTTGCCATCAGCTTTTGGACGCCGCCTTATAAAGATCTCCACATCTCAAACCCCGTCCCAGTTTTCTTCCGCCTAGTGAGAGCAACGGACGGTGCTACGTCGCACAACAGAACGTACACATATCTCCCTTCTGACTGCCCATGTCGTTCGAAATTGCCAGATTCTCGTATGTGCATCTCTCCTACGGTGAAAGTCCCAGAACAGGAAGAAGTCAAAGTAGGAAAAGTCAAGAGGTATCAGCCAATGGTGATGCCAATAATGACCTCGTACACCCGGATTGATCCAGACACTATGGCAAAACTACGTGTCCCCCAGCCTTCAAAAAAAGGACGGTTGCTGTCCAGCAACAATGAAGAATTCGATGCGATTTTCGACCACCATCGGGGAGATATAGATGAATCCTGCTACAACAACTCAAGTCAGAATAGCTATCGAGTTACAGTAAAGAGAGTTATGCTGTGTTAA
- Protein Sequence
- MAYQRGQRSSAVTLETNVSIAWASPSPRLSDEVEGDGKEQGYSDDEHSYSRPENSELHPNGNHKRRKRIHESQTTSSDDVENSQEQWRSGSSPIREGSRSEDSDDSTALVIKCEPEDDLCNIEDGDEQLVSTYEMLGNHHVKVEADPIALEEVLEQPYLEILDQPESSYRFRYKRESSKPHGPLKGRLHVDRGRNNSAYGPRVKLCNFYGEEAILRVWLFCGAEPSPHQLVSTAKVPSLNGPSEEVLQYEPHQVIVSGENNYTVSFSKLNILHVVCGDLDYQKRYYIKKHFSLSNSFIPPTNLPPFDPVSMKEEIKRKEKDIACLFIEAFEKTDKGYRKLCDIISENIKNKKSPKTNDLKILKQSHEEGSCRGNQQVLIFTEKLIKDVSVEFFEEDEDGEITWSSKASFKESDIHKQVAISFWTPPYKDLHISNPVPVFFRLVRATDGATSHNRTYTYLPSDCPCRSKLPDSRMCISPTVKVPEQEEVKVGKVKRYQPMVMPIMTSYTRIDPDTMAKLRVPQPSKKGRLLSSNNEEFDAIFDHHRGDIDESCYNNSSQNSYRVTVKRVMLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -