Ltri003459.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000400.1:43174-44214[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0041 9.8 6.1 0.3 25 46 145 165 134 172 0.82 2 4 0.0059 14 5.6 0.0 26 48 172 194 166 197 0.86 3 4 0.0026 6.2 6.7 0.1 22 49 227 254 220 258 0.88 4 4 0.00012 0.29 11.0 0.2 21 48 283 310 276 312 0.91
Sequence Information
- Coding Sequence
- atgagtGAACCACCTTTGTATCAGTGTCGtttatgtttaacaaattCGCAATTATGTTATTCACTGTTCGATAAAGGTGtgaatgaaataattgaaagtttCACACCAATTAAGATTGAAAACAATGAtgatttaccaacaaaatgTTGTCCGAAATGTTTAGAAGAGATCTATTTAGTTAATAAAATACGTTGTCGTATTGTGGAATCTGATCGAATTTTacgtgaaaaacaacaacaaaaagaagagtttgttgaaattaatgataataaatctgtgattgttataattaatgacgaaatttccaataatgatgatttgaCAACAATTGGTAAAGAGATTGTTGTAGAATCTGAaccaaatcaaatatttgaacaaaGTTCATCTAaggaaacaatagaaaatgatCAACCACAatcgaaaatattaataacaacatgTACGATATGCCTTACACaaataaaagtgaaaaattatcaacgtCACATGTTGTTGCATAATGCAACACAACAAATTTGTGAATTATGTGGTGcaattgcaaaaaattcaGAAAGTCTACGTGGTCATATGTTCTATATGCATAAATGTACAGCTGAAGAATATAAATGTGATCAATGTGGTAAATTCTAtcgttataaatataaatttttgttacataTGAGGAAGGCACATGGTGGTGAACGTACACATATTTGTGAAATATGTGGTAAATCATTTTATACAGGACGTGATGTTAATCGTCATATACaaatgaaacatttaaaattacgaCCATATAAATgtcaatattgtaataaaaatttttgtagtaCATCATCATTACAAACACATATACGACAACATACAAATGAGAAACCATATAAATGTGATGTGTGTTTGGAGTGTTTTCGACAAAAGATCTCGTTGAAAACACatctaaaatcaaaacatgatgttatattaaatacaaaagagaacaattcaattcaatag
- Protein Sequence
- MSEPPLYQCRLCLTNSQLCYSLFDKGVNEIIESFTPIKIENNDDLPTKCCPKCLEEIYLVNKIRCRIVESDRILREKQQQKEEFVEINDNKSVIVIINDEISNNDDLTTIGKEIVVESEPNQIFEQSSSKETIENDQPQSKILITTCTICLTQIKVKNYQRHMLLHNATQQICELCGAIAKNSESLRGHMFYMHKCTAEEYKCDQCGKFYRYKYKFLLHMRKAHGGERTHICEICGKSFYTGRDVNRHIQMKHLKLRPYKCQYCNKNFCSTSSLQTHIRQHTNEKPYKCDVCLECFRQKISLKTHLKSKHDVILNTKENNSIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00929924;
- 90% Identity
- iTF_00929924;
- 80% Identity
- iTF_00929924;