Ltri004969.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000666.1:33722-35267[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.014 34 4.3 0.0 22 46 195 219 189 224 0.88 2 6 0.0027 6.4 6.7 0.0 21 45 253 277 247 284 0.85 3 6 0.047 1.1e+02 2.7 0.1 23 44 283 304 276 309 0.80 4 6 0.00031 0.74 9.7 0.1 21 45 309 333 303 342 0.85 5 6 0.37 8.8e+02 -0.2 0.1 22 44 338 360 332 369 0.72 6 6 0.006 14 5.6 0.1 21 44 393 416 386 424 0.87
Sequence Information
- Coding Sequence
- atgattcAAAAAGTCTGTAGAATCTgtatgataacaacaaatgaaacaatctCATTATTTACATCAACACTATCAAATAATGGTATCAATATAGTGAATTTCTTACAACAAATCACAAATTTAGAGATTGTAGAAAATGATGGTTTACCGGATATAATTTGCtcaaattgttatcaaaaattgattgatttctttGAATTGATACAACAATGTATTGCATCTGatacaatattgaaaaattatgaaaatctaAGTGAAACTGAACAATTAGAAGATGACACTAACACCACTAACGATTTAGAAGCTTCcaatattattggaaataaatcgaataaataCGAATGTGATGAATGTTCCAcgacatttaataataaaatcaaatattcgaAACATACAAAAACACATGAAAACAACACATTTAAATGTCGTGAATGTTCACAGACATTCTCAAagaaattacatttaaacGTTCATCTACGATCACACACCAAAGATGAGAATAAACAATTCATTTGTAAAACGTGCGATAAACAATTTGCGTacgaatatttattaaaacaacacgaATTCAAACATAGCGATGATAAACCGTATCCATGCACAATTTGCGAGAAAGGTTGTTTAACAGCAGAAAGTCTACGGCGTCATATGAAGATCCACGATGATAATTATACGAAAAAGAAACATTCATGTAATATCTGTTCGAAAGAATTCGCCTATCCCAGTTTTCTGGCTGAACACATGAAGAATCATACCGGCGAAAAACCGTATCTGTGTTCGATATGCGGTAAAGGTTTCCGACAAAGTGGCGCTCTACATTACCACCAACGTGTCCATACCGGTTATAAACCGTTCACTTGTGAAATATGTAACAGTAATTTTATGTCACAAAGTGTTCTACGTGTACATATGCGTAAACATACAAATGAACGTCCGTATATTTGTCATATTTGTGGTGTGGGATTTCGACAATCGACCGATTTAAAAAGTCATCAACGTACACATTCCGGTGATAAACCGGTATTATGTACAATTTGCGGTAAACGTATGTCTACAACTGGTCAATTAACGATACATTTACGTACACATACCGGTGAGAAACCGTACGGTTGTATGAAATGTTCAAAAGCATTCACAACAAGAACAATGTTGGTGAAACATGAACGTATCCATACTGGTGAACGGCCGTATATTTGTGATATTTGTGGTAAAGCATTCAATCAAAGTGGTACATTGAAAACACATTATCGTACAcatagaaatacaaaaaagaaacaacaacaacaacgtaacAATAAAGATGTGGtggttgataataatttaattgaaatcaacgatttaaataaaaatatagaaactATTGAAACGGAAATTGTAACCgaacaatttattaatgataatataagaATGATTCATCATACGGAACATAATAGTGAAGTTAAGGCACATTTTACAGTCGTACTACCAGCACCGATACCACAATTACATCATCTCTAA
- Protein Sequence
- MIQKVCRICMITTNETISLFTSTLSNNGINIVNFLQQITNLEIVENDGLPDIICSNCYQKLIDFFELIQQCIASDTILKNYENLSETEQLEDDTNTTNDLEASNIIGNKSNKYECDECSTTFNNKIKYSKHTKTHENNTFKCRECSQTFSKKLHLNVHLRSHTKDENKQFICKTCDKQFAYEYLLKQHEFKHSDDKPYPCTICEKGCLTAESLRRHMKIHDDNYTKKKHSCNICSKEFAYPSFLAEHMKNHTGEKPYLCSICGKGFRQSGALHYHQRVHTGYKPFTCEICNSNFMSQSVLRVHMRKHTNERPYICHICGVGFRQSTDLKSHQRTHSGDKPVLCTICGKRMSTTGQLTIHLRTHTGEKPYGCMKCSKAFTTRTMLVKHERIHTGERPYICDICGKAFNQSGTLKTHYRTHRNTKKKQQQQRNNKDVVVDNNLIEINDLNKNIETIETEIVTEQFINDNIRMIHHTEHNSEVKAHFTVVLPAPIPQLHHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00929775;
- 90% Identity
- iTF_00929775;
- 80% Identity
- iTF_00929775;