Ltri011615.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010004071.1:463-1677[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00053 1.3 8.9 0.2 21 47 112 138 104 144 0.81 2 8 0.0041 9.6 6.1 0.1 22 52 141 171 136 172 0.86 3 8 0.024 56 3.7 0.2 22 46 169 193 166 199 0.88 4 8 0.22 5.1e+02 0.6 0.0 22 49 225 252 218 255 0.82 5 8 6e-05 0.14 11.9 0.1 21 46 252 277 244 282 0.89 6 8 0.0027 6.5 6.7 0.1 22 46 280 304 276 307 0.91 7 8 0.00083 2 8.3 0.1 21 51 307 337 303 338 0.88 8 8 0.00019 0.44 10.4 0.1 21 46 335 360 333 365 0.91
Sequence Information
- Coding Sequence
- atgttAACTAAGGAGaacaatgaaattgataatatcgaacaaaatgataacgagtacattattgatgataaaatagaTGTAGAAGATCCattaaaaattgAAAATGATGTTGCTGAATTGATTtatgaaaatgaagaaaatgataaagttagtattgatgaaattattgataagaaaatagaTATAGAAGATCCTTTAAAAATCgaaaatgaaattgatgatgtaAATACGTTTGTAGATACAATAGATAATGATCGTAATTATGCATGTAATGTTTGTGATAAGAGATTTTCTAGaaaagatattttaaaatcacatCTACGTGTACATACCGGTGAAAAACCATATCAATGTAATGTTTGTTATAAGAGATATTCACATAATTTTGGTTTAAAACgtcatttacaacaacatacCGGTGATAAACCATATAAATGTAATATATGTGATAAGAGATTTTCTGTAAAAcgtaattatcaaaaacatttaaaagtaCATACCGGTGATAAACCATATGAATGTGATATATGTcatagaaaatatttacataattatgatttaaatcgacatttaaaaatacataccGGTGAAAAATCGTATATATGTGGTACATGTGATAAGAGATTTTCGATAAAACgtcatttaatatttcattcaaGATTACATACAGGCGATAGACCATATGAATGTGATACATGTCATAAAAAATTTACCGATAATAgtgttttaaagaaacatttacGTATACATACTGGTGAAAAACCATATAAATGTGATATTTgtcataaattattttcatgtagtggtaatttaaaacaacatttaaatgtaCATATGGAACGACCATATCAATGTAGTATCTGTGAtaagaaattttcattaaagaaTAATTTAAGAACCCATTTAAGAATACACACCGGTGAAAGACCATTTGAATGTAATATTTGTCATaagaaattttcacaaaatgttacattaaaacatcatttaaatatacatacagGTGAAAAACCATATCAGTGTAGTACTTGTTATAGGAAATTTTCAGCCAGTGCTAGTTTAAAAAGACATTTAAAAGTACATACAGATGATAAACAATGttaa
- Protein Sequence
- MLTKENNEIDNIEQNDNEYIIDDKIDVEDPLKIENDVAELIYENEENDKVSIDEIIDKKIDIEDPLKIENEIDDVNTFVDTIDNDRNYACNVCDKRFSRKDILKSHLRVHTGEKPYQCNVCYKRYSHNFGLKRHLQQHTGDKPYKCNICDKRFSVKRNYQKHLKVHTGDKPYECDICHRKYLHNYDLNRHLKIHTGEKSYICGTCDKRFSIKRHLIFHSRLHTGDRPYECDTCHKKFTDNSVLKKHLRIHTGEKPYKCDICHKLFSCSGNLKQHLNVHMERPYQCSICDKKFSLKNNLRTHLRIHTGERPFECNICHKKFSQNVTLKHHLNIHTGEKPYQCSTCYRKFSASASLKRHLKVHTDDKQC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00929785;
- 90% Identity
- iTF_00929785;
- 80% Identity
- iTF_00929785;