Basic Information

Insect: Lydus trimaculatus
Gene Symbol: ECU03_0790_1
Assembly: GCA_037414755.1
Location: JAZBGY010000022.1:124203-126412[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.049 2.7 8.3 2.5 1 23 58 80 58 80 0.97

2 14 0.0038 0.21 11.8 1.9 2 23 86 107 86 107 0.98

3 14 0.0047 0.26 11.5 6.7 1 21 113 133 113 135 0.96

4 14 4.9e-05 0.0028 17.7 3.5 1 20 141 160 141 163 0.97

5 14 0.32 18 5.7 8.3 1 23 171 193 171 193 0.98

6 14 0.013 0.73 10.1 0.4 2 23 200 221 199 221 0.97

7 14 0.00021 0.012 15.7 1.4 1 23 226 249 226 249 0.97

8 14 4.3e-05 0.0024 17.9 0.4 2 23 253 274 253 274 0.97

9 14 3.6e-05 0.002 18.2 1.0 3 23 285 306 283 306 0.95

10 14 1.9e-06 0.00011 22.2 2.7 1 23 313 335 313 335 0.97

11 14 3.6e-05 0.002 18.2 1.6 1 23 339 361 339 361 0.96

12 14 6e-06 0.00034 20.6 6.0 1 23 367 389 367 389 0.98

13 14 0.017 0.96 9.7 4.7 1 23 395 417 395 417 0.96

14 14 4.1e-05 0.0023 18.0 4.0 1 23 423 445 423 445 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.049	2.7	8.3	2.5	1	23	58	80	58	80	0.97
2	14	0.0038	0.21	11.8	1.9	2	23	86	107	86	107	0.98
3	14	0.0047	0.26	11.5	6.7	1	21	113	133	113	135	0.96
4	14	4.9e-05	0.0028	17.7	3.5	1	20	141	160	141	163	0.97
5	14	0.32	18	5.7	8.3	1	23	171	193	171	193	0.98
6	14	0.013	0.73	10.1	0.4	2	23	200	221	199	221	0.97
7	14	0.00021	0.012	15.7	1.4	1	23	226	249	226	249	0.97
8	14	4.3e-05	0.0024	17.9	0.4	2	23	253	274	253	274	0.97
9	14	3.6e-05	0.002	18.2	1.0	3	23	285	306	283	306	0.95
10	14	1.9e-06	0.00011	22.2	2.7	1	23	313	335	313	335	0.97
11	14	3.6e-05	0.002	18.2	1.6	1	23	339	361	339	361	0.96
12	14	6e-06	0.00034	20.6	6.0	1	23	367	389	367	389	0.98
13	14	0.017	0.96	9.7	4.7	1	23	395	417	395	417	0.96
14	14	4.1e-05	0.0023	18.0	4.0	1	23	423	445	423	445	0.99

Sequence Information

Coding Sequence: ATGGAGAATTTAAATGGATTTGCtgtaaaaactgaaataaaacaagaaacttGCGAAATAATCGACGATAATCTAgagattaattgtaaaattgaaccaaataatacagatttaaataatgatgttgattaTGAGTcagaatttaacaaattcgaaaataatacaacagtATATCGTTGTAATTTatgtgataaaattttaaaaaaattcctcgattataaaatccataaaaaacaacatttcatTGAGAAACGTACATGTGAATTATGTAAACTTGTATGTCAATCAATTAGTAAATTACAAGTACATATGAATACACATTTAGGCATCAAACCATATAAATGTAACGtatgtaataaatcatttgtttgtaataatcaattaaGATTACATATGCGTTGTCATTCAActgaacaaaaatacaaatgtaaCAAATGTAATAAAGCATTCCGTTATTTAGGTTCATTACGGAGTCATATGGTGTGTCATAATAATgtgaaattacaagaatttaaATGTCAGgaTTGTGGACATACAAGTTCAACATTACAAAACCAccataaacatttaaaatcacATGGTAGAACGATTGTGATTAAATGTGAATTATGTTCAGCTACATTTAGTAGTGAtcgtattttacaaaatcatttaaatacaCATAAAGAATTACAATTTCCATGTGAATATTGTAAACGTATCTATCAATCATTGTATCGTTTAAAAAGGCATATAAAACGCGCCCATATACCGAATGTATGTGATGAATGCAATGAAATCTTCTATGATCGTTCATTATATacaaaacatataaaacaacataataataataataatgataaacaaacaatttgtgagtattgtaataaaaaatttgataaattaaaaaatctaaGTGAACATATACGtttacaacataaaaatgatggtaatttacatgaatgtaatttatgtaaaaagaaatttataaattcatcattattacgtaATCATATTAAAATCCatgataaatgttttaaatgtcAATATTGTGAGAAATTGTTTAGTTCACgttataatttagaaatacaTAATGTTACACATACAGgtgaaaaaaatcataaatgtTTAGAATGTGGTAAAtgttatacaacaaaaacaagtttaaaaaatcatcaagCAACCCATACAGATATACGTAAATTTAAATGTGAtcaatgtaaaaaattatttaaaacaaatcgtcgtttatatgtacataaattttcacatgcaattgatgaaaaatatgAATGTCATATATGTAATGCTAAATTTCGtgttaaacaatatttaaaatatcatatgaataaacattcaaatattaaacCATATGAATGTAAAaatttggAAATCAAATTGCCGACATTCAACGATATGGCCACCCATTATGATAACCTGTTTTCATCAGAACATAGTTTATGGATGGATTATACGATGACAAGTAAAGCACCAGATCCAATAGAATTACCATCACctgataaattgataataaaaaggaTCGATGATAATTCAGATATATCGATTGATTCTGGTATGAATTCGAAATTCGAAGAGAATACCCAATctgatgatcatgatgatgatcatcCTTCAaccaatttatataaaatcttttaa
Protein Sequence: MENLNGFAVKTEIKQETCEIIDDNLEINCKIEPNNTDLNNDVDYESEFNKFENNTTVYRCNLCDKILKKFLDYKIHKKQHFIEKRTCELCKLVCQSISKLQVHMNTHLGIKPYKCNVCNKSFVCNNQLRLHMRCHSTEQKYKCNKCNKAFRYLGSLRSHMVCHNNVKLQEFKCQDCGHTSSTLQNHHKHLKSHGRTIVIKCELCSATFSSDRILQNHLNTHKELQFPCEYCKRIYQSLYRLKRHIKRAHIPNVCDECNEIFYDRSLYTKHIKQHNNNNNDKQTICEYCNKKFDKLKNLSEHIRLQHKNDGNLHECNLCKKKFINSSLLRNHIKIHDKCFKCQYCEKLFSSRYNLEIHNVTHTGEKNHKCLECGKCYTTKTSLKNHQATHTDIRKFKCDQCKKLFKTNRRLYVHKFSHAIDEKYECHICNAKFRVKQYLKYHMNKHSNIKPYECKNLEIKLPTFNDMATHYDNLFSSEHSLWMDYTMTSKAPDPIELPSPDKLIIKRIDDNSDISIDSGMNSKFEENTQSDDHDDDHPSTNLYKIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00987318;
90% Identity: -
80% Identity: -