Ltri009878.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010002263.1:251-3228[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.5e-06 0.00025 21.0 3.1 1 23 162 184 162 184 0.98 2 13 2.3e-06 0.00013 21.9 2.4 2 23 189 210 188 210 0.96 3 13 1.9e-06 0.00011 22.2 1.5 1 23 215 237 215 237 0.97 4 13 2.6e-05 0.0015 18.6 2.6 1 23 243 265 243 265 0.97 5 13 7.1e-06 0.0004 20.4 5.3 1 23 271 293 271 293 0.98 6 13 1.6e-06 9.2e-05 22.4 0.4 1 23 299 321 299 321 0.96 7 13 4.2e-06 0.00023 21.1 0.5 1 23 349 371 349 371 0.98 8 13 1.1e-05 0.00062 19.8 1.1 1 23 376 398 376 398 0.98 9 13 1.9e-05 0.001 19.0 1.2 1 23 404 426 404 426 0.98 10 13 2.5e-05 0.0014 18.6 0.4 1 23 432 454 432 454 0.98 11 13 8e-06 0.00045 20.2 1.4 1 23 460 482 460 482 0.98 12 13 9.9e-06 0.00056 19.9 0.1 1 23 488 510 488 510 0.98 13 13 5.1e-06 0.00029 20.8 1.7 1 23 516 538 516 538 0.98
Sequence Information
- Coding Sequence
- atggatTTGTGTCGTTTATGCCATTTAGAAACACCCCCAAATTTTGGTAAGGATTTATATTTCAATGGAAATCGCTATCCTCAAAtacttgaaattgttgaaattttaactgGAATCAAAATATATGAGACTGATCCATTTCCAAAAATTGCATGTACTGATTGTTAtgagaaattgataaatttttataattttcgtaatttaatcTTACAAGCCGATTCGAAATTTCATCAAGAACTGTACAcgaacaatacaataaatgcAGTTAAAGTTGAAGTAGAAGAGCCCCCATTTGGATCTGAGAAAGAAGAACCAAACGAGCAGACAACTgtgaataacaataacaatcaagaattagatgatgatgaaaggAAAAATCTGATAGAACCTTCTAAATTGAAAACTGAGGAACAACTCCTTCCAATCGATGAAAACCAATTAAATCTTGataaagaacaaacaaaaccaacaactgGAGAGgtttataattgtaatttttgtgaaaaaactTTCTCATATCAATCAGAATTCACAACACATTTACGTTTacattataaatcaaaaacatgcaatatttgtaataaaacatttacaacaaaacgttATTTAAAAACACATCTAGATATACATAGagataagaaatatttttgtaaaatttgtggTAAATCATTTCGATTAAGTGCAAATTTATCAACACATAAAAAAGTACATACCGGTGAACGGCCACATgaatgtttgatttgtttaaagaaaTTCACATCAAGTACAACATTAAAAGTACATCAACGTATACATACTGGTGAAAAACCGTATCATTGTAATACGTGTggtaaacaattttcattcagTCAAAATTTTAAAGTCCATTTAAGAACACATACCGGTGAACGACAGTATTTGTGTGATATTTGTggtaaaaattacacaaatagtGGCTCTTTAAGAGTACATAAAAGAATCCATAATATTGGTACAGAGAAAGATTGTAGGATTTCAGATAACACTTATTCTGTATTAGAATCATTAGAGactaatgaaaaattgtttatctgTAAGATTTGTAATGAAACTTACAAAGATAAAACTTCATTAATCGAACATATACAGTCGCATAGTGATGGTAAATTCGTTTGTGAATTTTGTAGTAAAATTTTTACACAACGTAAAAATCTATATGCACATCTAGCAAAACATAAAGGTGGCAAACCGTATCCATGTacgatttgtaataaaatatttcgatGTGCGGCAAATTTAAGTAAACATCTAAGAGTACATAGTGGTGAAAGACCGTTCTCTTGTGAATTATGCGATGCAAAATTCTCTGAAAAAGCTACATTAAAAGTACATTATCGTATACATAATGATGAGAAACCATACACATGTTCGATATGTAATAAAGGTTTTCGAGTAAAATGTGCTTTAACTGTACATTTACGCGCGCACACTGATGAGAAACCGTACActtgtaatgtttgtaataaaagttttagaGTAGGTGCTGCTTTGAATGAACATATGGTAACGCATACTGGGAAAAAACCGTTTGTTTGTGAGATTTGTAATAAGAGCTTTTTAAGAAAATATCTATTGGCTAGACATCAGAAAAAGCATATAGAGAAAAATAATGAGACAATGGAAACGGATAAAAGCTTCGAATAA
- Protein Sequence
- MDLCRLCHLETPPNFGKDLYFNGNRYPQILEIVEILTGIKIYETDPFPKIACTDCYEKLINFYNFRNLILQADSKFHQELYTNNTINAVKVEVEEPPFGSEKEEPNEQTTVNNNNNQELDDDERKNLIEPSKLKTEEQLLPIDENQLNLDKEQTKPTTGEVYNCNFCEKTFSYQSEFTTHLRLHYKSKTCNICNKTFTTKRYLKTHLDIHRDKKYFCKICGKSFRLSANLSTHKKVHTGERPHECLICLKKFTSSTTLKVHQRIHTGEKPYHCNTCGKQFSFSQNFKVHLRTHTGERQYLCDICGKNYTNSGSLRVHKRIHNIGTEKDCRISDNTYSVLESLETNEKLFICKICNETYKDKTSLIEHIQSHSDGKFVCEFCSKIFTQRKNLYAHLAKHKGGKPYPCTICNKIFRCAANLSKHLRVHSGERPFSCELCDAKFSEKATLKVHYRIHNDEKPYTCSICNKGFRVKCALTVHLRAHTDEKPYTCNVCNKSFRVGAALNEHMVTHTGKKPFVCEICNKSFLRKYLLARHQKKHIEKNNETMETDKSFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00929741;
- 90% Identity
- iTF_00929741;
- 80% Identity
- iTF_00929741;