Ltri001158.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- MBD-R2
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000092.1:1-5600[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-16 9.5e-13 47.3 0.1 7 70 402 464 396 471 0.92
Sequence Information
- Coding Sequence
- ATGATTCGTAAATGTGCCGTTGATGGTTGTTTATCTGAATCGAATCGTCAAGAAGATACTGGTGTTACATTCCATCGTATACCACATCAACCAGATCTTCGAACAAAATGGCTATCATTATGCCATATAACACcggataatgataataaaaaaccaataaaaatgttatatgTATGTTCCCGTCATTTTCTACGTAtggatttttgtaattttaaaggtAAAAAATATATGTTGAAACAAGGTGTGTTACCCAGTGTTTTTCCATGGGATAAATCCAAATTGGAGGCTATAAAAGTTAAGAAAGATCCAAATGAATCTGATATtgttaaaatggaaattgatgataatagtgaATTGGAGAAAAATGACGATAATTCAATGAATATTacagaaaatcaacaacaattacaaaatgaacaaaaactggataatacaaatgataaacaagatgataatgaaatgaaaataaaaacatctaATCGTTCgataaattttgcaataaattcaCGTATTGAAGcattagattttaataatatttggtATCCTGCACGTATTGTTGAAGAAGATTATGAAGAAAATGAAGTGTTGATACATTttgagaaattttcaaataaatatgatgaatGGATATGTATGGATAGTCCACGTTTGAGACCTTTACAATCAACAacgccaacaacaacaacaacaacaacagaaacaacaaataaaactgtacATAAATATTCGATTGGTGAACGTTGTCTAGCTTCATGGAGTGATGCTAGGAAATTTCCAGCAACTGTCActaaaattctatcaaatgacaCATATGAGGTGTTATTTGATGATGGTTTTGTTAAAAGTTTAAAATCGCATCGTATTAGTAAAACAGAAGGTAAACATTTacaatcatcaccattatttGATCCTGTACAAAGTTCGAAACAAGAACGTCGTGAAAAGAAACGTAAAATTGATATTGCTGCATTATTTGGTAAACGTCAAAAATTGGATGTTCAAGATGATAAACCAAAAACAACATCTattacagcaacaacaacaacaacaacaacaataacaccaatacAACATCCTAATCCAGAACAAGTTACAGAAGATGAAATTTATGAACCATGGGTACCTGAatGGGAGAATGGTCGTCCTGTTGGTattgaatcaaaaattgatatacAAGATggtataaaaaaatcaatcattgtACCAGATCCACGTTTACCAATCGGTTGGGTAAAACATTTAACACAACGTATAAATGGTGCATCAGCTGGTAAATGggatacaataattataagtCCTGATAATCGACGATTTCGTTCACGTtctgaaattaaacaatatttagatgaaacaaaattaatgaaatataattGGTCAATGTTTGATTTTAGTATACATAGACATCGTAATAAACGTAAAGATTTAGAAATgatttatcataataataataataataataataataataataataataataatagtactAATATACATGATGAATCATTAACTAGTTGTAATGGTGATGATAGTCAAACTGGTGATGATCAAAATACTGATGGTAATGAAGATGAAGaaaattcaacattaaaaatacCTGTAGTTGATGATGGTTATGAATGTCCAATAGATGGTTGTAAGAAGATTTTTCGTAAAGAAAATTTAGCACAAATGCATATAAAACATTATCATCCagaatatacaaaatatttaaattcaacaccAAATGTTGCTGATTTAGCTTATGCACGTACTgttggtgatttattattagataaacaacaatcacaacaacaacaacaaacccaacaacaaacaacaccaaataaaacaattacacaaaataaacaaattaaaaaacaacaagaaactgATAGTAAtgaatcacaacaacaacaacaatcagcatcatcatcaccaatatcatcatcatcgaataAAAGCAATtcggaaattttaaaattattaaacaccAAATCtacagaaaataataatagtaataataataataataatagtaataatgttAAT
- Protein Sequence
- MIRKCAVDGCLSESNRQEDTGVTFHRIPHQPDLRTKWLSLCHITPDNDNKKPIKMLYVCSRHFLRMDFCNFKGKKYMLKQGVLPSVFPWDKSKLEAIKVKKDPNESDIVKMEIDDNSELEKNDDNSMNITENQQQLQNEQKLDNTNDKQDDNEMKIKTSNRSINFAINSRIEALDFNNIWYPARIVEEDYEENEVLIHFEKFSNKYDEWICMDSPRLRPLQSTTPTTTTTTTETTNKTVHKYSIGERCLASWSDARKFPATVTKILSNDTYEVLFDDGFVKSLKSHRISKTEGKHLQSSPLFDPVQSSKQERREKKRKIDIAALFGKRQKLDVQDDKPKTTSITATTTTTTTITPIQHPNPEQVTEDEIYEPWVPEWENGRPVGIESKIDIQDGIKKSIIVPDPRLPIGWVKHLTQRINGASAGKWDTIIISPDNRRFRSRSEIKQYLDETKLMKYNWSMFDFSIHRHRNKRKDLEMIYHNNNNNNNNNNNNNNSTNIHDESLTSCNGDDSQTGDDQNTDGNEDEENSTLKIPVVDDGYECPIDGCKKIFRKENLAQMHIKHYHPEYTKYLNSTPNVADLAYARTVGDLLLDKQQSQQQQQTQQQTTPNKTITQNKQIKKQQETDSNESQQQQQSASSSPISSSSNKSNSEILKLLNTKSTENNNSNNNNNNSNNVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00929622;
- 90% Identity
- iTF_00929622;
- 80% Identity
- iTF_00929622;