Lpor009671.2
Basic Information
- Insect
- Lycophotia porphyrea
- Gene Symbol
- -
- Assembly
- GCA_950005105.1
- Location
- OX465391.1:10204783-10206573[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-08 1.2e-05 25.7 0.0 5 36 1 32 1 39 0.91
Sequence Information
- Coding Sequence
- ATGGCACAAGCTATAAAATTCGTCCGGGAAAAGAAAATGGGGTATTTGAAAGCGGCACAGCATTTTCAAGTGCCTAGGACAACTTTATTTCGTCTCTGCCAAAAAGATGAACAGTCTCCAGAAGTGGCAGCAGCTACTACATTAGGACGAAAAACTATCTTGGGCTCCGAACTTGAACATCAGCTAGTAGAATACATACTAATAATGGAGAGTAAGTTTCACGGTTTAACAAGAACTGATCTTCGCCGTATGGCGTTCATGCTAGCAAAGCGAAACAATTTGCAGAATCCCTTCGGTGAATCAGGTATGGCTGGAAAAAAGtggttaaagttatttttaaatcgtcATAAAGATAAACTTTCGATAAGAAGACCAACTGGTACATCATTTGCCAGAGCATTTGGATTTGATAAAGAAAAAGTGGAAGCCTTTTTCAACCTCCTTGAAGAGCTTTACGCTAAGAATAACTATCCACCAAATCGTATTTACAACGTGGATGAATCAGGCCTCACAATAGTACAAAGTAAGATACCACAAATCATCGGCCACAAAGGTAAACGCCAGGTAGCTGCACTGACTTCAGCAGAAAGAGGATCTCTGATGACAATAGTTGTTTGCATGAATGCTACTGGTCATTTTGTGCCACCGTTCATTATTTTTCTCAGAAAAAATATGAGTGCTCAGCTAATGAGAGGCTGTCCTCCAGGATCAGTCGGAGTTGCACACCCATCAGGGTGGATACAAATGAACATCTTTACAGACTGGTTCAAGCACTTTATTCAACACACCAACCCGACTCCTGAATCGAGGGTTTTACTGATACTAGACGGACACTATAGTCATACTCACAATATCGATATAATAGATATTGCTAGGGAAAATAACGTGGACATAGTTTCGTTACCTCCTCATACGACTCATAAATTGCAGCCATTAGATAAAACTTTCATGGGGCCTTTAAAAACATACTATAGTGAGGAAATACGCATGTGGATTAGAGACAACAACAGACCTCTAAGTCCATATGATATTGTGGAGCTGTTTGGCAAATCCTATTTGAAAGTACAAACAGGCGAAATCGCAGCCAACGGGTTCAAAGTTACTGGATTGTggcctttaaataaaaatgtcttcaGTGATGTGGACTTTATTGCTGCGCAACAAAATGCTTTAATAGACGGTTGTACAACCAATATCCCTCCGCTGGAATCAAGATCTGAAACTGGTCAAGTTCTGGTAGAAATACCTGCACCACAAACAACTGCTAATTTACAACCTGAACCTGTACCTTCGACTTCTGGGCTTAATCGCAGCAGTTTGGGTCTGGTGTCTCCGTATGCCATAAGTCCAGTGCCAGAGAAACGAAGAAAAGTATCTAGCAGAGGAAGAAAAGCTGCTGTAGCAGCAGTCATAACATCTTCTCCCTACAAAActgatttagaaaataaaaatatgaagagacaagaaaaagaaaataaactagtCAAGACAAAGAATAAGAAGAAAACTGCgaagagaaacaaacaaacgaagaAAAATAAGGATGATAGTGAAGAAGAAGACTCTGAGGAACTAGACGTTATCCAGTTTGATGAAGGTAGTGAACATGATGAGTTGATGGACCAAGTACCTCCTGACTCTGCTGATGCAGAATGTATGTTCTGTTCAAGACTTTTTTCCATGGATAAAAGTGGAGAAAGCTGGATTAAATGCTTGATGTGTGGGCTCTGGGCACATTATGATTGTGCTGGTCCAGAGTTTGATACTTGGATCTGTGACTTTTGCAAGTAA
- Protein Sequence
- MAQAIKFVREKKMGYLKAAQHFQVPRTTLFRLCQKDEQSPEVAAATTLGRKTILGSELEHQLVEYILIMESKFHGLTRTDLRRMAFMLAKRNNLQNPFGESGMAGKKWLKLFLNRHKDKLSIRRPTGTSFARAFGFDKEKVEAFFNLLEELYAKNNYPPNRIYNVDESGLTIVQSKIPQIIGHKGKRQVAALTSAERGSLMTIVVCMNATGHFVPPFIIFLRKNMSAQLMRGCPPGSVGVAHPSGWIQMNIFTDWFKHFIQHTNPTPESRVLLILDGHYSHTHNIDIIDIARENNVDIVSLPPHTTHKLQPLDKTFMGPLKTYYSEEIRMWIRDNNRPLSPYDIVELFGKSYLKVQTGEIAANGFKVTGLWPLNKNVFSDVDFIAAQQNALIDGCTTNIPPLESRSETGQVLVEIPAPQTTANLQPEPVPSTSGLNRSSLGLVSPYAISPVPEKRRKVSSRGRKAAVAAVITSSPYKTDLENKNMKRQEKENKLVKTKNKKKTAKRNKQTKKNKDDSEEEDSEELDVIQFDEGSEHDELMDQVPPDSADAECMFCSRLFSMDKSGESWIKCLMCGLWAHYDCAGPEFDTWICDFCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01024787;
- 90% Identity
- iTF_01024787;
- 80% Identity
- -