Lpor000175.1
Basic Information
- Insect
- Lycophotia porphyrea
- Gene Symbol
- ttk
- Assembly
- GCA_950005105.1
- Location
- OX465383.1:2977639-2991067[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-15 5.3e-13 49.2 0.0 1 42 344 386 344 389 0.94
Sequence Information
- Coding Sequence
- ATGTCGCAACAGTACAGCTTGCGGTGGAACAACCACCAGCCCAACTTCATCTCGATGTTCACCACACTGCTGAACACCCAGACGCTGGTGGACGTCACGTTGTCTGCGGATGGCAAGCAGCTACTGGCACACAAAGTGGTCTTGTCTGCGTGCAGTACCTATTTCCATTCTCTGTTTGTGGAACACCCGGCGGCTCATCCGATCGTGATCTTGAAGGATGTCACCTACGCCGATCTTCGCACCATGGTGGACTTTATGTACTGTGGGGAAGTGAACGTAACTGAGGAGCAGTTGCCTCAGGTACTGGATACCGCAAAGCTCCTGAAGATCAAGGGCCTGACAGAGATGCCAGACTCCACGTCCCTGACGCGCTCGCAGCGTACGTCCGCGGACTTCCAGAACCAGGCGGACTCGATGGACTCGTCGCGGCACTCCCCCGCCGCGTCGCCTTCTAACAAGCGCCGGAGGCGCCGAAAAAGTTCAACGGGCTCGACGCAACTGAACGTGCTCGAGAACGAGCAAGGCCGCGCGGACGTAGGCGCTCAAACCGTGGACGCGATCACTCTGAGCAGCGTCCCACAGCAACAACGGCGCGTGCGTGAATACCACGAGATCCGGACCATCGACAACTCCCAGCAGGTAGACGACCCTGACGGCGTGGTACACACAGTAGACTACGCACAGCAGGTAGACGAAGACACAAACGAACAAGACAACATGAACATGGACACCATTGCAGTAGATAACACGAACACGACCCCAACCGCCATACCGAACCAAGGAGGACAGTGGACAATGATGGAGCACTCGTACCCGCGATACACGAACGCGTGCGCCGGCGCCGCGCTGCAGCAGGAGCCAGGCATGTACATGAACAACGTGATCGAGCCGCACATGGACGACCTGCACTACGCGCAGAGCCTGGGCGTAGCCGGCCCGTCGCCCGGCCCCTCGTGCCAGGACGTGCAGGCCGCCACCGAGCCaccgccccccgcgccccccaAGCGCCGCCGCACGACCAACCCGCAGTCCGAGGAAAACTTTCAGCGCGCGCTAGAGGCCGTGCGCTTCGGCGGCATAGGCTTCTGCAAGGCGGCGCGCATGTTCGGCGTCAACAACCGCACGCTCTGGCTCGAGTACAAGAAGAAGGGCTACCCCAACAACAGGCCTAGCATCAAGAGCAGAATCAAGCGCGAGCACACGACGCCGCCGCCCGAGCACAAGGACGAGCCTGTGCCGCCCCCgcaacagatggcgctgctgtgcCCGCAGCACCAGCTGCCCCCCGGTTTCCTGGAGCCCGGCGCGCCGCATGGCTTCCCTCTGCAGAGCGTGGCGCACAACTCGCCCCTCAACCTCCTCGGCGTGAACTTTAACTCGATGCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLSADGKQLLAHKVVLSACSTYFHSLFVEHPAAHPIVILKDVTYADLRTMVDFMYCGEVNVTEEQLPQVLDTAKLLKIKGLTEMPDSTSLTRSQRTSADFQNQADSMDSSRHSPAASPSNKRRRRRKSSTGSTQLNVLENEQGRADVGAQTVDAITLSSVPQQQRRVREYHEIRTIDNSQQVDDPDGVVHTVDYAQQVDEDTNEQDNMNMDTIAVDNTNTTPTAIPNQGGQWTMMEHSYPRYTNACAGAALQQEPGMYMNNVIEPHMDDLHYAQSLGVAGPSPGPSCQDVQAATEPPPPAPPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKDEPVPPPQQMALLCPQHQLPPGFLEPGAPHGFPLQSVAHNSPLNLLGVNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01361512;
- 90% Identity
- iTF_00301332;
- 80% Identity
- iTF_00928837;